{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS7533FCII/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7533FCII",
"aliases": [
"ali-mortazavi:007_67A_illumina"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS7533FCII](/measurement-sets/IGVFDS7533FCII/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS7533FCII/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS7533FCII](/measurement-sets/IGVFDS7533FCII/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS7533FCII/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS7533FCII](/measurement-sets/IGVFDS7533FCII/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS7533FCII/"
},
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM7956VUAG](/multiplexed-samples/IGVFSM7956VUAG/) has in progress subobject tabular file [IGVFFI4658LINI](/tabular-files/IGVFFI4658LINI/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM7956VUAG/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM7956VUAG](/multiplexed-samples/IGVFSM7956VUAG/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM7956VUAG/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping",
"contact_pi": {
"@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
"control_for": [],
"creation_timestamp": "2023-10-09T17:25:51.756247+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO5502NJPS/",
"accession": "IGVFDO5502NJPS",
"aliases": [
"ali-mortazavi:038_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0681EHNP/",
"accession": "IGVFDO0681EHNP",
"aliases": [
"ali-mortazavi:052_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0751WQHI/",
"accession": "IGVFDO0751WQHI",
"aliases": [
"ali-mortazavi:080_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2319OUEC/",
"accession": "IGVFDO2319OUEC",
"aliases": [
"ali-mortazavi:045_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5539RLXJ/",
"accession": "IGVFDO5539RLXJ",
"aliases": [
"ali-mortazavi:029_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3603MEIO/",
"accession": "IGVFDO3603MEIO",
"aliases": [
"ali-mortazavi:084_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7007WBAX/",
"accession": "IGVFDO7007WBAX",
"aliases": [
"ali-mortazavi:016_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7610XXRR/",
"accession": "IGVFDO7610XXRR",
"aliases": [
"ali-mortazavi:072_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9202WGJZ/",
"accession": "IGVFDO9202WGJZ",
"aliases": [
"ali-mortazavi:085_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1643VEDI/",
"accession": "IGVFDO1643VEDI",
"aliases": [
"ali-mortazavi:019_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6066JIEJ/",
"accession": "IGVFDO6066JIEJ",
"aliases": [
"ali-mortazavi:043_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6141KSSQ/",
"accession": "IGVFDO6141KSSQ",
"aliases": [
"ali-mortazavi:024_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
"aliases": [
"ali-mortazavi:046_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5177QEWF/",
"accession": "IGVFDO5177QEWF",
"aliases": [
"ali-mortazavi:063_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3436ZMLY/",
"accession": "IGVFDO3436ZMLY",
"aliases": [
"ali-mortazavi:091_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9374WXKK/",
"accession": "IGVFDO9374WXKK",
"aliases": [
"ali-mortazavi:028_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5258MBVH/",
"accession": "IGVFDO5258MBVH",
"aliases": [
"ali-mortazavi:040_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9890MXGN/",
"accession": "IGVFDO9890MXGN",
"aliases": [
"ali-mortazavi:068_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5737FRWD/",
"accession": "IGVFDO5737FRWD",
"aliases": [
"ali-mortazavi:081_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5183UZGS/",
"accession": "IGVFDO5183UZGS",
"aliases": [
"ali-mortazavi:021_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6607QZPA/",
"accession": "IGVFDO6607QZPA",
"aliases": [
"ali-mortazavi:050_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1452VDIT/",
"accession": "IGVFDO1452VDIT",
"aliases": [
"ali-mortazavi:035_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3640WUBU/",
"accession": "IGVFDO3640WUBU",
"aliases": [
"ali-mortazavi:066_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9510ILZG/",
"accession": "IGVFDO9510ILZG",
"aliases": [
"ali-mortazavi:053_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3762EAWT/",
"accession": "IGVFDO3762EAWT",
"aliases": [
"ali-mortazavi:076_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8904OIIT/",
"accession": "IGVFDO8904OIIT",
"aliases": [
"ali-mortazavi:044_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1477BPVO/",
"accession": "IGVFDO1477BPVO",
"aliases": [
"ali-mortazavi:088_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6112GRYR/",
"accession": "IGVFDO6112GRYR",
"aliases": [
"ali-mortazavi:059_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6219LVKW/",
"accession": "IGVFDO6219LVKW",
"aliases": [
"ali-mortazavi:032_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9560CEGZ/",
"accession": "IGVFDO9560CEGZ",
"aliases": [
"ali-mortazavi:061_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6614NNPY/",
"accession": "IGVFDO6614NNPY",
"aliases": [
"ali-mortazavi:089_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5085MJSP/",
"accession": "IGVFDO5085MJSP",
"aliases": [
"ali-mortazavi:048_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7951JDSP/",
"accession": "IGVFDO7951JDSP",
"aliases": [
"ali-mortazavi:026_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2831PZHE/",
"accession": "IGVFDO2831PZHE",
"aliases": [
"ali-mortazavi:077_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0813DZTW/",
"accession": "IGVFDO0813DZTW",
"aliases": [
"ali-mortazavi:069_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4707SGWM/",
"accession": "IGVFDO4707SGWM",
"aliases": [
"ali-mortazavi:051_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7254QNQZ/",
"accession": "IGVFDO7254QNQZ",
"aliases": [
"ali-mortazavi:031_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2517TXOT/",
"accession": "IGVFDO2517TXOT",
"aliases": [
"ali-mortazavi:092_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0026YRCR/",
"accession": "IGVFDO0026YRCR",
"aliases": [
"ali-mortazavi:018_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8152XDDC/",
"accession": "IGVFDO8152XDDC",
"aliases": [
"ali-mortazavi:090_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5872DFML/",
"accession": "IGVFDO5872DFML",
"aliases": [
"ali-mortazavi:094_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3655FKMR/",
"accession": "IGVFDO3655FKMR",
"aliases": [
"ali-mortazavi:025_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5523UFUN/",
"accession": "IGVFDO5523UFUN",
"aliases": [
"ali-mortazavi:070_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4788BIQB/",
"accession": "IGVFDO4788BIQB",
"aliases": [
"ali-mortazavi:020_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7255VZBN/",
"accession": "IGVFDO7255VZBN",
"aliases": [
"ali-mortazavi:062_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8322VYDU/",
"accession": "IGVFDO8322VYDU",
"aliases": [
"ali-mortazavi:093_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2292YGGE/",
"accession": "IGVFDO2292YGGE",
"aliases": [
"ali-mortazavi:049_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4725SNCJ/",
"accession": "IGVFDO4725SNCJ",
"aliases": [
"ali-mortazavi:017_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0430HQIU/",
"accession": "IGVFDO0430HQIU",
"aliases": [
"ali-mortazavi:041_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1744FDIX/",
"accession": "IGVFDO1744FDIX",
"aliases": [
"ali-mortazavi:036_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0624KKTV/",
"accession": "IGVFDO0624KKTV",
"aliases": [
"ali-mortazavi:030_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8958JQIY/",
"accession": "IGVFDO8958JQIY",
"aliases": [
"ali-mortazavi:047_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2645GUSC/",
"accession": "IGVFDO2645GUSC",
"aliases": [
"ali-mortazavi:060_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9142EUBJ/",
"accession": "IGVFDO9142EUBJ",
"aliases": [
"ali-mortazavi:096_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4469VYEZ/",
"accession": "IGVFDO4469VYEZ",
"aliases": [
"ali-mortazavi:073_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7062NBTQ/",
"accession": "IGVFDO7062NBTQ",
"aliases": [
"ali-mortazavi:079_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2301HIUQ/",
"accession": "IGVFDO2301HIUQ",
"aliases": [
"ali-mortazavi:067_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3207TERA/",
"accession": "IGVFDO3207TERA",
"aliases": [
"ali-mortazavi:086_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3662UKFW/",
"accession": "IGVFDO3662UKFW",
"aliases": [
"ali-mortazavi:087_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0853BCOL/",
"accession": "IGVFDO0853BCOL",
"aliases": [
"ali-mortazavi:058_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2106EEWB/",
"accession": "IGVFDO2106EEWB",
"aliases": [
"ali-mortazavi:078_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9340WGNV/",
"accession": "IGVFDO9340WGNV",
"aliases": [
"ali-mortazavi:037_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9199TPBC/",
"accession": "IGVFDO9199TPBC",
"aliases": [
"ali-mortazavi:071_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0696DMIA/",
"accession": "IGVFDO0696DMIA",
"aliases": [
"ali-mortazavi:057_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7957DMLJ/",
"accession": "IGVFDO7957DMLJ",
"aliases": [
"ali-mortazavi:033_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI2379APFS/",
"accession": "IGVFFI2379APFS",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T03:41:25.048576+00:00",
"file_format": "fastq",
"file_size": 13351699281,
"href": "/sequence-files/IGVFFI2379APFS/@@download/IGVFFI2379APFS.fastq.gz",
"md5sum": "682cc0f9f49992a85cd311df37531925",
"s3_uri": "s3://igvf-files/2023/10/10/03afce0f-a53c-48c9-9989-9401beab6c89/IGVFFI2379APFS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B02_D_nova_N1_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3692YXTU/",
"accession": "IGVFFI3692YXTU",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T04:11:36.241904+00:00",
"file_format": "fastq",
"file_size": 6459753023,
"href": "/sequence-files/IGVFFI3692YXTU/@@download/IGVFFI3692YXTU.fastq.gz",
"md5sum": "97de238c9c86119ce023c867e5676fe6",
"s3_uri": "s3://igvf-files/2023/10/10/12b002ad-c7cf-4cee-b7c4-00b76e47d690/IGVFFI3692YXTU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B02_D_nova_N2_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6190SGTD/",
"accession": "IGVFFI6190SGTD",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T03:49:56.159535+00:00",
"file_format": "fastq",
"file_size": 13062789357,
"href": "/sequence-files/IGVFFI6190SGTD/@@download/IGVFFI6190SGTD.fastq.gz",
"md5sum": "20562b1be3d2e1858e52d79d703ae41b",
"s3_uri": "s3://igvf-files/2023/10/10/ec3deb97-0072-4c98-a172-1b7303ba9bc8/IGVFFI6190SGTD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B02_D_nova_N1_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0536LOHR/",
"accession": "IGVFFI0536LOHR",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T03:58:10.888460+00:00",
"file_format": "fastq",
"file_size": 12854523485,
"href": "/sequence-files/IGVFFI0536LOHR/@@download/IGVFFI0536LOHR.fastq.gz",
"md5sum": "0d86fc00bda1f7dd140bb7cbc64a3db9",
"s3_uri": "s3://igvf-files/2023/10/10/a4037a6e-85e4-470f-9f38-6201a48be9a8/IGVFFI0536LOHR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B02_D_nova_N2_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2262ITOH/",
"accession": "IGVFFI2262ITOH",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T04:14:29.876012+00:00",
"file_format": "fastq",
"file_size": 12815909225,
"href": "/sequence-files/IGVFFI2262ITOH/@@download/IGVFFI2262ITOH.fastq.gz",
"md5sum": "39a47476cc0eeb0d88584b7889206c88",
"s3_uri": "s3://igvf-files/2023/10/10/9e560927-2872-4e7b-a1e3-0975681d78b1/IGVFFI2262ITOH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B02_D_nova_N2_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7030BLPG/",
"accession": "IGVFFI7030BLPG",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T04:19:50.616891+00:00",
"file_format": "fastq",
"file_size": 6384557106,
"href": "/sequence-files/IGVFFI7030BLPG/@@download/IGVFFI7030BLPG.fastq.gz",
"md5sum": "5f74a16a683081419a4f29596b314d49",
"s3_uri": "s3://igvf-files/2023/10/10/8bc8906e-25a6-4ace-bca3-60606e376e31/IGVFFI7030BLPG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B02_D_nova_N2_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0802JJNZ/",
"accession": "IGVFFI0802JJNZ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T03:55:22.651382+00:00",
"file_format": "fastq",
"file_size": 6451553061,
"href": "/sequence-files/IGVFFI0802JJNZ/@@download/IGVFFI0802JJNZ.fastq.gz",
"md5sum": "fa07484bb1d54c840a2ceb9e1f661511",
"s3_uri": "s3://igvf-files/2023/10/10/b49a8b0c-8c65-4c53-9809-f8460da7c44a/IGVFFI0802JJNZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B02_D_nova_N1_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7677TQEJ/",
"accession": "IGVFFI7677TQEJ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T03:33:00.340783+00:00",
"file_format": "fastq",
"file_size": 13186454211,
"href": "/sequence-files/IGVFFI7677TQEJ/@@download/IGVFFI7677TQEJ.fastq.gz",
"md5sum": "da1e3960e6595d47558ec744431b4d69",
"s3_uri": "s3://igvf-files/2023/10/10/fed128c0-aede-4666-8840-80a57ea4931d/IGVFFI7677TQEJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B02_D_nova_N1_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6304KHAD/",
"accession": "IGVFFI6304KHAD",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T04:03:29.210043+00:00",
"file_format": "fastq",
"file_size": 6437536314,
"href": "/sequence-files/IGVFFI6304KHAD/@@download/IGVFFI6304KHAD.fastq.gz",
"md5sum": "b28d12a867fa621f6285781a36aa699f",
"s3_uri": "s3://igvf-files/2023/10/10/bc2d0a4c-421b-4044-b717-e8ab1fffb26a/IGVFFI6304KHAD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B02_D_nova_N2_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8977ZKGT/",
"accession": "IGVFFI8977ZKGT",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T04:06:09.381786+00:00",
"file_format": "fastq",
"file_size": 12946785454,
"href": "/sequence-files/IGVFFI8977ZKGT/@@download/IGVFFI8977ZKGT.fastq.gz",
"md5sum": "0101694eba2057221337028045aa0672",
"s3_uri": "s3://igvf-files/2023/10/10/7f4a1325-f8d6-4726-82dd-fe21cae8414f/IGVFFI8977ZKGT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B02_D_nova_N2_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0797IQWC/",
"accession": "IGVFFI0797IQWC",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T04:27:54.675068+00:00",
"file_format": "fastq",
"file_size": 6442535807,
"href": "/sequence-files/IGVFFI0797IQWC/@@download/IGVFFI0797IQWC.fastq.gz",
"md5sum": "ad8763ebd425c0ce25fe79bf270490f1",
"s3_uri": "s3://igvf-files/2023/10/10/b6833646-0d4b-4076-a345-70ac7b14112e/IGVFFI0797IQWC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B02_D_nova_N2_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3604TVIC/",
"accession": "IGVFFI3604TVIC",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T03:24:36.505785+00:00",
"file_format": "fastq",
"file_size": 13221847361,
"href": "/sequence-files/IGVFFI3604TVIC/@@download/IGVFFI3604TVIC.fastq.gz",
"md5sum": "3799795af8c4e30073a277ba16ac704d",
"s3_uri": "s3://igvf-files/2023/10/10/a039521d-9821-4ddd-8854-1519863ed948/IGVFFI3604TVIC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B02_D_nova_N1_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2097PAWV/",
"accession": "IGVFFI2097PAWV",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T03:30:14.472536+00:00",
"file_format": "fastq",
"file_size": 6538701518,
"href": "/sequence-files/IGVFFI2097PAWV/@@download/IGVFFI2097PAWV.fastq.gz",
"md5sum": "9c7ffb753183d74241091921bf833b77",
"s3_uri": "s3://igvf-files/2023/10/10/a1784bf5-1efe-4b3a-a772-d7f11b606dda/IGVFFI2097PAWV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B02_D_nova_N1_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1575TELL/",
"accession": "IGVFFI1575TELL",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T03:38:32.408744+00:00",
"file_format": "fastq",
"file_size": 6511146956,
"href": "/sequence-files/IGVFFI1575TELL/@@download/IGVFFI1575TELL.fastq.gz",
"md5sum": "f02b5c5517243ed981b5e82d795e4121",
"s3_uri": "s3://igvf-files/2023/10/10/451743e3-9924-4985-b874-3e31b8fc60ed/IGVFFI1575TELL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B02_D_nova_N1_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7815KEQR/",
"accession": "IGVFFI7815KEQR",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T03:47:06.958134+00:00",
"file_format": "fastq",
"file_size": 6608517770,
"href": "/sequence-files/IGVFFI7815KEQR/@@download/IGVFFI7815KEQR.fastq.gz",
"md5sum": "884697756fa470e7110a32ee9d3d92f7",
"s3_uri": "s3://igvf-files/2023/10/10/ac07564d-9739-461a-bf9b-466292dc136c/IGVFFI7815KEQR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova1/igvf_007_B02_D_nova_N1_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4633NNGL/",
"accession": "IGVFFI4633NNGL",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-10T04:22:37.377927+00:00",
"file_format": "fastq",
"file_size": 12930215599,
"href": "/sequence-files/IGVFFI4633NNGL/@@download/IGVFFI4633NNGL.fastq.gz",
"md5sum": "e55501e9d6d6dfae11c623d3f642a91f",
"s3_uri": "s3://igvf-files/2023/10/10/ae2c318c-e6a9-4aa4-b0e0-06746b2efaf4/IGVFFI4633NNGL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_007/nova2/igvf_007_B02_D_nova_N2_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI0411OEVI/",
"accession": "IGVFFI0411OEVI",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T22:59:56.133000+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI0411OEVI/@@download/IGVFFI0411OEVI.yaml.gz",
"md5sum": "6060612c8878d92bf3b1b5eb9fc4da44",
"s3_uri": "s3://igvf-files/2024/09/17/6ade6a18-1d1c-4a34-9a2f-68e8db480264/IGVFFI0411OEVI.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6348ANXY/",
"accession": "IGVFFI6348ANXY",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:02.517414+00:00",
"file_format": "yaml",
"file_size": 1349,
"href": "/configuration-files/IGVFFI6348ANXY/@@download/IGVFFI6348ANXY.yaml.gz",
"md5sum": "f225d6914de61ade4670cfc1f316a519",
"s3_uri": "s3://igvf-files/2024/09/17/79b5aeda-0000-4474-b0e4-1442f4fddff6/IGVFFI6348ANXY.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7408JRHL/",
"accession": "IGVFFI7408JRHL",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T22:59:54.916811+00:00",
"file_format": "yaml",
"file_size": 1353,
"href": "/configuration-files/IGVFFI7408JRHL/@@download/IGVFFI7408JRHL.yaml.gz",
"md5sum": "1b1ece083338b721b00de37fa62cc86d",
"s3_uri": "s3://igvf-files/2024/09/17/2a8dd64b-833e-476d-82bc-453bc4036011/IGVFFI7408JRHL.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI1104RRQQ/",
"accession": "IGVFFI1104RRQQ",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T22:59:57.563002+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI1104RRQQ/@@download/IGVFFI1104RRQQ.yaml.gz",
"md5sum": "af27aa3e27513b0e8bb73b192f1ce0be",
"s3_uri": "s3://igvf-files/2024/09/17/6edbaadb-ea6a-4384-8552-52e08c40466b/IGVFFI1104RRQQ.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI5061OFUE/",
"accession": "IGVFFI5061OFUE",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:00.797656+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI5061OFUE/@@download/IGVFFI5061OFUE.yaml.gz",
"md5sum": "fe9057f372b92e8b74639b6fcfbf32d1",
"s3_uri": "s3://igvf-files/2024/09/17/cac0d9ae-8b3d-4a8c-94b3-170c7c7cc149/IGVFFI5061OFUE.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI9785UURN/",
"accession": "IGVFFI9785UURN",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T22:59:53.698224+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI9785UURN/@@download/IGVFFI9785UURN.yaml.gz",
"md5sum": "effc1a24d69ed8d74125c72fa66453ea",
"s3_uri": "s3://igvf-files/2024/09/17/c7f1680e-808f-4f12-a98a-558ad51fb5e2/IGVFFI9785UURN.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6603RTRR/",
"accession": "IGVFFI6603RTRR",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T22:59:58.875270+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI6603RTRR/@@download/IGVFFI6603RTRR.yaml.gz",
"md5sum": "ed767570aabe5bbbf0f85184e60e42f4",
"s3_uri": "s3://igvf-files/2024/09/17/164f20e5-12c1-4636-a450-c2d85aee2be3/IGVFFI6603RTRR.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6118SCBF/",
"accession": "IGVFFI6118SCBF",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T23:00:03.993620+00:00",
"file_format": "yaml",
"file_size": 1349,
"href": "/configuration-files/IGVFFI6118SCBF/@@download/IGVFFI6118SCBF.yaml.gz",
"md5sum": "ce9b792512abaa3e874f7b493eedc174",
"s3_uri": "s3://igvf-files/2024/09/17/4c887aea-c55d-4afd-941e-f069b343bc93/IGVFFI6118SCBF.yaml.gz",
"status": "released",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS1162EVFG/"
],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
"onlist_files": [
"/tabular-files/IGVFFI2591OFQO/",
"/tabular-files/IGVFFI1138MCVX/"
],
"onlist_method": "multi",
"preferred_assay_title": "Parse SPLiT-seq",
"protocols": [
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-36wgq3e3ylk5/v1",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-n92ldm8b8l5b/v2",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-5qpvo3837v4o/v1",
"https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
"https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
],
"release_timestamp": "2025-04-19T00:13:10.325380+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM7956VUAG/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM7956VUAG",
"aliases": [
"ali-mortazavi:subpool_007_67A"
],
"cellular_sub_pool": "007_67A",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000007/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "pituitary gland",
"term_name": "pituitary gland"
},
{
"@id": "/sample-terms/UBERON_0000473/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "testis",
"term_name": "testis"
},
{
"@id": "/sample-terms/UBERON_0000992/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "ovary",
"term_name": "ovary"
},
{
"@id": "/sample-terms/UBERON_0000993/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "oviduct",
"term_name": "oviduct"
},
{
"@id": "/sample-terms/UBERON_0001301/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "epididymis",
"term_name": "epididymis"
},
{
"@id": "/sample-terms/UBERON_0001898/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "hypothalamus",
"term_name": "hypothalamus"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"schema_version": "26",
"sequencing_library_types": [
"mRNA enriched"
],
"status": "released",
"strand_specificity": "5 prime to 3 prime",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_files_timestamp": "2023-10-10T03:24:36.505785+00:00",
"summary": "Parse SPLiT-seq",
"uuid": "8abd8fe0-5fc5-4068-88f3-ddcf0ed268f7"
}