{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS7428FAPP/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7428FAPP",
"aliases": [
"buenrostro-bernstein:scRNA Lib 451"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM1144ESXR](/in-vitro-systems/IGVFSM1144ESXR/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM1144ESXR/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS7428FAPP](/measurement-sets/IGVFDS7428FAPP/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS7428FAPP/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS7428FAPP](/measurement-sets/IGVFDS7428FAPP/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS7428FAPP/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS7428FAPP](/measurement-sets/IGVFDS7428FAPP/) has in progress subobject tabular file [IGVFFI8433TDKP](/tabular-files/IGVFFI8433TDKP/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS7428FAPP/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS7428FAPP](/measurement-sets/IGVFDS7428FAPP/) is missing required `strand_specificity`. Gene expression based assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS7428FAPP/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping",
"contact_pi": {
"@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2024-08-20T14:57:14.247750+00:00",
"data_use_limitation_summaries": [
"GRU"
],
"donors": [
{
"@id": "/human-donors/IGVFDO3773GAHC/",
"accession": "IGVFDO3773GAHC",
"aliases": [
"buenrostro-bernstein:Donor 1817"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0186ZZOL/",
"accession": "IGVFDO0186ZZOL",
"aliases": [
"buenrostro-bernstein:Donor 1862"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3469EFJR/",
"accession": "IGVFDO3469EFJR",
"aliases": [
"buenrostro-bernstein:Donor 1741"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0674VHCY/",
"accession": "IGVFDO0674VHCY",
"aliases": [
"buenrostro-bernstein:Donor 1896"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6328ESSA/",
"accession": "IGVFDO6328ESSA",
"aliases": [
"buenrostro-bernstein:Donor 1768"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2664ZLXL/",
"accession": "IGVFDO2664ZLXL",
"aliases": [
"buenrostro-bernstein:Donor 1891"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6675DJLJ/",
"accession": "IGVFDO6675DJLJ",
"aliases": [
"buenrostro-bernstein:Donor 1837"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5895ABMM/",
"accession": "IGVFDO5895ABMM",
"aliases": [
"buenrostro-bernstein:Donor 1824"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9942ECYN/",
"accession": "IGVFDO9942ECYN",
"aliases": [
"buenrostro-bernstein:Donor 1742"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0143YSWQ/",
"accession": "IGVFDO0143YSWQ",
"aliases": [
"buenrostro-bernstein:Donor 1860"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5686BULO/",
"accession": "IGVFDO5686BULO",
"aliases": [
"buenrostro-bernstein:Donor 1870"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4197GLLD/",
"accession": "IGVFDO4197GLLD",
"aliases": [
"buenrostro-bernstein:Donor 1866"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6837BSOS/",
"accession": "IGVFDO6837BSOS",
"aliases": [
"buenrostro-bernstein:Donor 1812"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8404YTWG/",
"accession": "IGVFDO8404YTWG",
"aliases": [
"buenrostro-bernstein:Donor 1865"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1502TPVD/",
"accession": "IGVFDO1502TPVD",
"aliases": [
"buenrostro-bernstein:Donor 1849"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2015BBZM/",
"accession": "IGVFDO2015BBZM",
"aliases": [
"buenrostro-bernstein:Donor 1813"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5342CGKC/",
"accession": "IGVFDO5342CGKC",
"aliases": [
"buenrostro-bernstein:Donor 1882"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7567RWAK/",
"accession": "IGVFDO7567RWAK",
"aliases": [
"buenrostro-bernstein:Donor 1857"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0916PWWE/",
"accession": "IGVFDO0916PWWE",
"aliases": [
"buenrostro-bernstein:Donor 1845"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0392YIJG/",
"accession": "IGVFDO0392YIJG",
"aliases": [
"buenrostro-bernstein:Donor 1892"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1697JGEF/",
"accession": "IGVFDO1697JGEF",
"aliases": [
"buenrostro-bernstein:Donor 1835"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0995XOJH/",
"accession": "IGVFDO0995XOJH",
"aliases": [
"buenrostro-bernstein:Donor 1872"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8250RHCQ/",
"accession": "IGVFDO8250RHCQ",
"aliases": [
"buenrostro-bernstein:Donor 1854"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2142TSPQ/",
"accession": "IGVFDO2142TSPQ",
"aliases": [
"buenrostro-bernstein:Donor 1881"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0597VIVH/",
"accession": "IGVFDO0597VIVH",
"aliases": [
"buenrostro-bernstein:Donor 1874"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1429GCHH/",
"accession": "IGVFDO1429GCHH",
"aliases": [
"buenrostro-bernstein:Donor 1810"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3707NTZB/",
"accession": "IGVFDO3707NTZB",
"aliases": [
"buenrostro-bernstein:Donor 1853"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7956CWXZ/",
"accession": "IGVFDO7956CWXZ",
"aliases": [
"buenrostro-bernstein:Donor 1821"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0233FJJF/",
"accession": "IGVFDO0233FJJF",
"aliases": [
"buenrostro-bernstein:Donor 1834"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4379UQON/",
"accession": "IGVFDO4379UQON",
"aliases": [
"buenrostro-bernstein:Donor 1842"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6694QTLS/",
"accession": "IGVFDO6694QTLS",
"aliases": [
"buenrostro-bernstein:Donor 1826"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5446TLJJ/",
"accession": "IGVFDO5446TLJJ",
"aliases": [
"buenrostro-bernstein:Donor 1894"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2453FLSI/",
"accession": "IGVFDO2453FLSI",
"aliases": [
"buenrostro-bernstein:Donor 1832"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2298PENP/",
"accession": "IGVFDO2298PENP",
"aliases": [
"buenrostro-bernstein:Donor 1879"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1318DUVG/",
"accession": "IGVFDO1318DUVG",
"aliases": [
"buenrostro-bernstein:Donor 1833"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9301UFXR/",
"accession": "IGVFDO9301UFXR",
"aliases": [
"buenrostro-bernstein:Donor 1815"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1656HYLL/",
"accession": "IGVFDO1656HYLL",
"aliases": [
"buenrostro-bernstein:Donor 1847"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5333XVCI/",
"accession": "IGVFDO5333XVCI",
"aliases": [
"buenrostro-bernstein:Donor 1818"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0455AULY/",
"accession": "IGVFDO0455AULY",
"aliases": [
"buenrostro-bernstein:Donor 1814"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8979DYIF/",
"accession": "IGVFDO8979DYIF",
"aliases": [
"buenrostro-bernstein:Donor 1743"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6553AADC/",
"accession": "IGVFDO6553AADC",
"aliases": [
"buenrostro-bernstein:Donor 1841"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9737GFZX/",
"accession": "IGVFDO9737GFZX",
"aliases": [
"buenrostro-bernstein:Donor 1839"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0285FFEG/",
"accession": "IGVFDO0285FFEG",
"aliases": [
"buenrostro-bernstein:Donor 1828"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0436YOXD/",
"accession": "IGVFDO0436YOXD",
"aliases": [
"buenrostro-bernstein:Donor 1745"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2131TKFT/",
"accession": "IGVFDO2131TKFT",
"aliases": [
"buenrostro-bernstein:Donor 1811"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4141QBHD/",
"accession": "IGVFDO4141QBHD",
"aliases": [
"buenrostro-bernstein:Donor 1883"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0166JLWT/",
"accession": "IGVFDO0166JLWT",
"aliases": [
"buenrostro-bernstein:Donor 1816"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6704FGWL/",
"accession": "IGVFDO6704FGWL",
"aliases": [
"buenrostro-bernstein:Donor 1875"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1906JPPE/",
"accession": "IGVFDO1906JPPE",
"aliases": [
"buenrostro-bernstein:Donor 1893"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4222QOSB/",
"accession": "IGVFDO4222QOSB",
"aliases": [
"buenrostro-bernstein:Donor 1827"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5257YVJL/",
"accession": "IGVFDO5257YVJL",
"aliases": [
"buenrostro-bernstein:Donor 1825"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8532BOID/",
"accession": "IGVFDO8532BOID",
"aliases": [
"buenrostro-bernstein:Donor 1823"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0144AKUR/",
"accession": "IGVFDO0144AKUR",
"aliases": [
"buenrostro-bernstein:Donor 1850"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1215CYXN/",
"accession": "IGVFDO1215CYXN",
"aliases": [
"buenrostro-bernstein:Donor 1843"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0527HIIJ/",
"accession": "IGVFDO0527HIIJ",
"aliases": [
"buenrostro-bernstein:Donor 1838"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6316KUFG/",
"accession": "IGVFDO6316KUFG",
"aliases": [
"buenrostro-bernstein:Donor 1871"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0875HNRV/",
"accession": "IGVFDO0875HNRV",
"aliases": [
"buenrostro-bernstein:Donor 1895"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9707NUOC/",
"accession": "IGVFDO9707NUOC",
"aliases": [
"buenrostro-bernstein:Donor 1859"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7817ENDD/",
"accession": "IGVFDO7817ENDD",
"aliases": [
"buenrostro-bernstein:Donor 1877"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6673DKZI/",
"accession": "IGVFDO6673DKZI",
"aliases": [
"buenrostro-bernstein:Donor 1880"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9594EWNE/",
"accession": "IGVFDO9594EWNE",
"aliases": [
"buenrostro-bernstein:Donor 1878"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2044WGSW/",
"accession": "IGVFDO2044WGSW",
"aliases": [
"buenrostro-bernstein:Donor 1856"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6295KHUE/",
"accession": "IGVFDO6295KHUE",
"aliases": [
"buenrostro-bernstein:Donor 1863"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0273LMQQ/",
"accession": "IGVFDO0273LMQQ",
"aliases": [
"buenrostro-bernstein:Donor 1876"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6890GKJS/",
"accession": "IGVFDO6890GKJS",
"aliases": [
"buenrostro-bernstein:Donor 1836"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3937NOVL/",
"accession": "IGVFDO3937NOVL",
"aliases": [
"buenrostro-bernstein:Donor 1858"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6556DSRS/",
"accession": "IGVFDO6556DSRS",
"aliases": [
"buenrostro-bernstein:Donor 1848"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1778GJAD/",
"accession": "IGVFDO1778GJAD",
"aliases": [
"buenrostro-bernstein:Donor 1778"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3364ORGK/",
"accession": "IGVFDO3364ORGK",
"aliases": [
"buenrostro-bernstein:Donor 1897"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7983CLUG/",
"accession": "IGVFDO7983CLUG",
"aliases": [
"buenrostro-bernstein:Donor 1852"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7440MWLG/",
"accession": "IGVFDO7440MWLG",
"aliases": [
"buenrostro-bernstein:Donor 1846"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1535CIEE/",
"accession": "IGVFDO1535CIEE",
"aliases": [
"buenrostro-bernstein:Donor 1793"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2372UULO/",
"accession": "IGVFDO2372UULO",
"aliases": [
"buenrostro-bernstein:Donor 1840"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6626TJEC/",
"accession": "IGVFDO6626TJEC",
"aliases": [
"buenrostro-bernstein:Donor 1888"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3170VPEQ/",
"accession": "IGVFDO3170VPEQ",
"aliases": [
"buenrostro-bernstein:Donor 1864"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4689NFPC/",
"accession": "IGVFDO4689NFPC",
"aliases": [
"buenrostro-bernstein:Donor 1770"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8727EFXZ/",
"accession": "IGVFDO8727EFXZ",
"aliases": [
"buenrostro-bernstein:Donor 1831"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2343ZVKW/",
"accession": "IGVFDO2343ZVKW",
"aliases": [
"buenrostro-bernstein:Donor 1869"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6180JBWH/",
"accession": "IGVFDO6180JBWH",
"aliases": [
"buenrostro-bernstein:Donor 1855"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5074GHND/",
"accession": "IGVFDO5074GHND",
"aliases": [
"buenrostro-bernstein:Donor 1890"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5829IPZL/",
"accession": "IGVFDO5829IPZL",
"aliases": [
"buenrostro-bernstein:Donor 1772"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1094DCZZ/",
"accession": "IGVFDO1094DCZZ",
"aliases": [
"buenrostro-bernstein:Donor 1885"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2628QOSP/",
"accession": "IGVFDO2628QOSP",
"aliases": [
"buenrostro-bernstein:Donor 1830"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1165TQMX/",
"accession": "IGVFDO1165TQMX",
"aliases": [
"buenrostro-bernstein:Donor 1887"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6720KIII/",
"accession": "IGVFDO6720KIII",
"aliases": [
"buenrostro-bernstein:Donor 1868"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2627YUXH/",
"accession": "IGVFDO2627YUXH",
"aliases": [
"buenrostro-bernstein:Donor 1886"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0452ROLO/",
"accession": "IGVFDO0452ROLO",
"aliases": [
"buenrostro-bernstein:Donor 1867"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5748WCDL/",
"accession": "IGVFDO5748WCDL",
"aliases": [
"buenrostro-bernstein:Donor 1889"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7542OMCX/",
"accession": "IGVFDO7542OMCX",
"aliases": [
"buenrostro-bernstein:Donor 1819"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4451SLQW/",
"accession": "IGVFDO4451SLQW",
"aliases": [
"buenrostro-bernstein:Donor 1789"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9402EPTG/",
"accession": "IGVFDO9402EPTG",
"aliases": [
"buenrostro-bernstein:Donor 1829"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2796VIEN/",
"accession": "IGVFDO2796VIEN",
"aliases": [
"buenrostro-bernstein:Donor 1884"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8772PWON/",
"accession": "IGVFDO8772PWON",
"aliases": [
"buenrostro-bernstein:Donor 1873"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2028ZXZQ/",
"accession": "IGVFDO2028ZXZQ",
"aliases": [
"buenrostro-bernstein:Donor 1820"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3184WKWK/",
"accession": "IGVFDO3184WKWK",
"aliases": [
"buenrostro-bernstein:Donor 1861"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7476FWEA/",
"accession": "IGVFDO7476FWEA",
"aliases": [
"buenrostro-bernstein:Donor 1851"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6969ZGNB/",
"accession": "IGVFDO6969ZGNB",
"aliases": [
"buenrostro-bernstein:Donor 1844"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8776OLQD/",
"accession": "IGVFDO8776OLQD",
"aliases": [
"buenrostro-bernstein:Donor 1744"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3154SUBV/",
"accession": "IGVFDO3154SUBV",
"aliases": [
"buenrostro-bernstein:Donor 1746"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4620JPIG/",
"accession": "IGVFDO4620JPIG",
"aliases": [
"buenrostro-bernstein:Donor 1822"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI4637CLUK/",
"accession": "IGVFFI4637CLUK",
"aliases": [
"buenrostro-bernstein:SS-LS_912_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:07:30.156253+00:00",
"file_format": "fastq",
"file_size": 960760478,
"href": "/sequence-files/IGVFFI4637CLUK/@@download/IGVFFI4637CLUK.fastq.gz",
"md5sum": "30ad64476151c6c1daf339c49478ebf0",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/d0e252a5-d839-48ba-8b6a-5a53e03ffd27/IGVFFI4637CLUK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-925_L6_SS-PKR-188_SS-V1-1st-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5361DOXW/",
"accession": "IGVFFI5361DOXW",
"aliases": [
"buenrostro-bernstein:SS-LS_912_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:07:31.433383+00:00",
"file_format": "fastq",
"file_size": 476001238,
"href": "/sequence-files/IGVFFI5361DOXW/@@download/IGVFFI5361DOXW.fastq.gz",
"md5sum": "34fb50749f69de2c3b9edd77f930baee",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/2a8e0fdb-6ea2-436f-8d54-31145b73f8af/IGVFFI5361DOXW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/cca2af5e-c2b5-4c00-9fab-f45a4a2745fa/wf_create_fastq_barcode/f3c24cc3-beb1-4ab0-b13b-c33ad6f81763/call-create_fastq_barcode/shard-0/SS-CoPA-925_L6_SS-PKR-188_SS-V1-1st-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2949MAQN/",
"accession": "IGVFFI2949MAQN",
"aliases": [
"buenrostro-bernstein:SS-LS_870_R2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:32:12.084763+00:00",
"file_format": "fastq",
"file_size": 502129339,
"href": "/sequence-files/IGVFFI2949MAQN/@@download/IGVFFI2949MAQN.fastq.gz",
"md5sum": "0c66f4f55ff7ef854805dab0e79dc3cc",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/009e7006-6222-4d77-b23e-2d6305c69802/IGVFFI2949MAQN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/cca2af5e-c2b5-4c00-9fab-f45a4a2745fa/wf_create_fastq_barcode/f3c24cc3-beb1-4ab0-b13b-c33ad6f81763/call-create_fastq_barcode/shard-1/SS-CoPA-925_L5_SS-PKR-188_SS-V1-1st-THIRD_R2.R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4002JTAQ/",
"accession": "IGVFFI4002JTAQ",
"aliases": [
"buenrostro-bernstein:SS-LS_870_R1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2024-08-20T15:32:11.030475+00:00",
"file_format": "fastq",
"file_size": 1001375879,
"href": "/sequence-files/IGVFFI4002JTAQ/@@download/IGVFFI4002JTAQ.fastq.gz",
"md5sum": "788a001e28e8fd4d65a86218fb4fca76",
"s3_uri": "s3://igvf-restricted-files/2024/08/20/cbfa61d1-aa27-4438-8f5c-7eee242028d0/IGVFFI4002JTAQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://broad-epi-ss-lane-subsets/SS-CoPA-925_L5_SS-PKR-188_SS-V1-1st-THIRD_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI7108HCKY/",
"accession": "IGVFFI7108HCKY",
"aliases": [
"buenrostro-bernstein:SS-LS_912_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T14:19:01.658185+00:00",
"file_format": "yaml",
"file_size": 1372,
"href": "/configuration-files/IGVFFI7108HCKY/@@download/IGVFFI7108HCKY.yaml.gz",
"md5sum": "b57863634704b0e6ed112e1d55c8bd02",
"s3_uri": "s3://igvf-files/2024/09/18/20847339-0e43-485a-80be-98bf92e81792/IGVFFI7108HCKY.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI4637CLUK_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4318OFOD/",
"accession": "IGVFFI4318OFOD",
"aliases": [
"buenrostro-bernstein:SS-LS_870_seqspec"
],
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T14:19:50.400763+00:00",
"file_format": "yaml",
"file_size": 1371,
"href": "/configuration-files/IGVFFI4318OFOD/@@download/IGVFFI4318OFOD.yaml.gz",
"md5sum": "a747cb49d5a6bcb6802f689456b65e93",
"s3_uri": "s3://igvf-files/2024/09/18/d412c295-f13a-4f63-bd95-18c80bf35fb9/IGVFFI4318OFOD.yaml.gz",
"status": "released",
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI4002JTAQ_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4541QHAO/",
"accession": "IGVFFI4541QHAO",
"aliases": [
"buenrostro-bernstein:SS-LS_912_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T02:28:21.092635+00:00",
"file_format": "fastq",
"file_size": 373778465,
"href": "/sequence-files/IGVFFI4541QHAO/@@download/IGVFFI4541QHAO.fastq.gz",
"md5sum": "50faaa68227c1ba3db36b1308556a3bf",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/e2fb3478-01a3-4361-b1c2-92458710f099/IGVFFI4541QHAO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/cca2af5e-c2b5-4c00-9fab-f45a4a2745fa/wf_create_fastq_barcode/f3c24cc3-beb1-4ab0-b13b-c33ad6f81763/call-create_fastq_barcode/shard-0/SS-CoPA-925_L6_SS-PKR-188_SS-V1-1st-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3210XOOO/",
"accession": "IGVFFI3210XOOO",
"aliases": [
"buenrostro-bernstein:SS-LS_870_barcode"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-03-25T02:27:11.109651+00:00",
"file_format": "fastq",
"file_size": 383006327,
"href": "/sequence-files/IGVFFI3210XOOO/@@download/IGVFFI3210XOOO.fastq.gz",
"md5sum": "4237bd255d511ede725ae84505fcbd97",
"s3_uri": "s3://igvf-restricted-files/2025/03/25/db1fae1c-8420-4b34-9a07-9b9ae10fe6ca/IGVFFI3210XOOO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "gs://fc-bde04173-e601-40f3-84b5-6c7f0d9be441/submissions/final-outputs/cca2af5e-c2b5-4c00-9fab-f45a4a2745fa/wf_create_fastq_barcode/f3c24cc3-beb1-4ab0-b13b-c33ad6f81763/call-create_fastq_barcode/shard-1/SS-CoPA-925_L5_SS-PKR-188_SS-V1-1st-THIRD_R2.barcode_file.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS0803IVOI/"
],
"lab": {
"@id": "/labs/jason-buenrostro/",
"title": "Jason Buenrostro, Broad"
},
"multiome_size": 2,
"onlist_files": [
"/tabular-files/IGVFFI8433TDKP/",
"/tabular-files/IGVFFI0400MBIM/"
],
"onlist_method": "multi",
"preferred_assay_title": "SHARE-seq",
"protocols": [
"https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw"
],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS6532YIGO/",
"accession": "IGVFDS6532YIGO",
"status": "released"
}
],
"release_timestamp": "2025-04-22T04:10:48.996450+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM1144ESXR/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1144ESXR",
"aliases": [
"buenrostro-bernstein:BioSam 4870_SS-PKR 188"
],
"cellular_sub_pool": "SS-PKR 188",
"classifications": [
"cell line",
"pooled cell specimen"
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/26d0a66b-5c86-4326-b305-806fb13d2ae5/",
"certificate_identifier": "IP113-01",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/31aa03ce-8ec8-409b-8a6c-c115297c10f4/",
"certificate_identifier": "IP113-02",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/07b1e07f-a66a-4bd5-9c1a-a8632e734789/",
"certificate_identifier": "IP113-03",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/3c3d7aa1-227e-43c8-8c68-2d3ad8e280b9/",
"certificate_identifier": "IP113-04",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/dff99f30-9e29-4410-bdb4-eed4b70432cf/",
"certificate_identifier": "IP113-05",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/10318039-d9e6-4dd0-8d92-4c551493b9fe/",
"certificate_identifier": "IP113-06",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/32e245d0-ae4b-4334-b826-ed5bf00f111f/",
"certificate_identifier": "IP113-07",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/35c8ed2e-cf1b-4cdd-a6ee-e766e7c3d954/",
"certificate_identifier": "IP113-08",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/70134af2-c4fd-43b4-96a6-9133a119a715/",
"certificate_identifier": "IP113-09",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/8a10acc0-7e24-4912-8833-10141ccf9b5f/",
"certificate_identifier": "IP113-10",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/21c46421-0482-4d0d-ad82-99387fc6add6/",
"certificate_identifier": "IP113-11",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/b117b3dd-25d9-4262-a262-630852050446/",
"certificate_identifier": "IP113-12",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/ae438897-696e-4b7a-98a2-e72438a76b31/",
"certificate_identifier": "IP113-13",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/4542d787-ea26-4176-b01c-5c45ca11b802/",
"certificate_identifier": "IP113-14",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/74917306-afc2-447b-88b2-a97e3e758518/",
"certificate_identifier": "IP113-15",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/fc5dc734-179b-45b8-bb32-e4f57a6bf59c/",
"certificate_identifier": "IP113-16",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/cf9e5e74-e4e6-40d4-bf04-c86fafe9d17e/",
"certificate_identifier": "IP113-17",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/ebddd6b0-c53f-4e05-a451-b5167df7cebd/",
"certificate_identifier": "IP113-18",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/109b8309-9842-4caa-80f7-9f3d1be0c8c1/",
"certificate_identifier": "IP113-19",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
},
{
"@id": "/institutional-certificates/d1431ff4-0095-49ba-a179-5fe34043afeb/",
"certificate_identifier": "IP113-20",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004905/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "induced pluripotent stem cell",
"term_name": "induced pluripotent stem cell"
}
],
"status": "released",
"summary": "Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 188)",
"taxa": "Homo sapiens"
}
],
"schema_version": "26",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-08-20T15:07:30.156253+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "be57a303-57df-4322-83f2-26e0e79c925a"
}