{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS7403HHLV/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7403HHLV",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"assay_slims": [
"CRISPR screens"
],
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS7403HHLV](/measurement-sets/IGVFDS7403HHLV/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS7403HHLV/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS7403HHLV](/measurement-sets/IGVFDS7403HHLV/) has sequence file(s) [IGVFFI4126JRYP](/sequence-files/IGVFFI4126JRYP/), [IGVFFI6753LWKP](/sequence-files/IGVFFI6753LWKP/), [IGVFFI7889TNAF](/sequence-files/IGVFFI7889TNAF/), [IGVFFI6541JGFZ](/sequence-files/IGVFFI6541JGFZ/), [IGVFFI6438LITQ](/sequence-files/IGVFFI6438LITQ/), [IGVFFI2174TQBM](/sequence-files/IGVFFI2174TQBM/), [IGVFFI7930PLEW](/sequence-files/IGVFFI7930PLEW/), [IGVFFI7370QYEK](/sequence-files/IGVFFI7370QYEK/), [IGVFFI2776LTMW](/sequence-files/IGVFFI2776LTMW/), [IGVFFI0945EJMP](/sequence-files/IGVFFI0945EJMP/), [IGVFFI2842EDJI](/sequence-files/IGVFFI2842EDJI/), [IGVFFI0813LGQI](/sequence-files/IGVFFI0813LGQI/), [IGVFFI6225GLFN](/sequence-files/IGVFFI6225GLFN/), [IGVFFI7356JDYX](/sequence-files/IGVFFI7356JDYX/), [IGVFFI2538CSOH](/sequence-files/IGVFFI2538CSOH/), [IGVFFI1608JBBS](/sequence-files/IGVFFI1608JBBS/), [IGVFFI7181WODT](/sequence-files/IGVFFI7181WODT/), [IGVFFI0225FNQX](/sequence-files/IGVFFI0225FNQX/), [IGVFFI7346XVXB](/sequence-files/IGVFFI7346XVXB/), [IGVFFI7237DJRH](/sequence-files/IGVFFI7237DJRH/), [IGVFFI5402XMEI](/sequence-files/IGVFFI5402XMEI/), [IGVFFI2152KHXJ](/sequence-files/IGVFFI2152KHXJ/), [IGVFFI6230OQLR](/sequence-files/IGVFFI6230OQLR/), [IGVFFI3420CNBD](/sequence-files/IGVFFI3420CNBD/), [IGVFFI3214JGEH](/sequence-files/IGVFFI3214JGEH/), [IGVFFI8214EBRF](/sequence-files/IGVFFI8214EBRF/), [IGVFFI4957DKGR](/sequence-files/IGVFFI4957DKGR/), [IGVFFI4426OOFF](/sequence-files/IGVFFI4426OOFF/), [IGVFFI1932APVQ](/sequence-files/IGVFFI1932APVQ/), [IGVFFI4683OAAI](/sequence-files/IGVFFI4683OAAI/), [IGVFFI8912ZZEC](/sequence-files/IGVFFI8912ZZEC/), [IGVFFI1409URYL](/sequence-files/IGVFFI1409URYL/), [IGVFFI1960GGTO](/sequence-files/IGVFFI1960GGTO/), [IGVFFI7494KNPP](/sequence-files/IGVFFI7494KNPP/), [IGVFFI4346HMWL](/sequence-files/IGVFFI4346HMWL/), [IGVFFI1261XJCS](/sequence-files/IGVFFI1261XJCS/), [IGVFFI3673JWHX](/sequence-files/IGVFFI3673JWHX/), [IGVFFI9059CEVY](/sequence-files/IGVFFI9059CEVY/), [IGVFFI4568EMWF](/sequence-files/IGVFFI4568EMWF/), [IGVFFI5846LIZE](/sequence-files/IGVFFI5846LIZE/), [IGVFFI1867GVHT](/sequence-files/IGVFFI1867GVHT/), [IGVFFI7064HJJK](/sequence-files/IGVFFI7064HJJK/), [IGVFFI3233UQOL](/sequence-files/IGVFFI3233UQOL/), [IGVFFI0664MBPI](/sequence-files/IGVFFI0664MBPI/), [IGVFFI0284ZTNM](/sequence-files/IGVFFI0284ZTNM/), [IGVFFI0927NXPV](/sequence-files/IGVFFI0927NXPV/), [IGVFFI9905VMGC](/sequence-files/IGVFFI9905VMGC/), [IGVFFI1972HVMR](/sequence-files/IGVFFI1972HVMR/) which lack specification of a `sequencing_kit`. Sequence files in a file set associated wtih bulk data should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS7403HHLV/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS7403HHLV](/measurement-sets/IGVFDS7403HHLV/) has sequence file(s): [IGVFFI4126JRYP](/sequence-files/IGVFFI4126JRYP/), [IGVFFI6753LWKP](/sequence-files/IGVFFI6753LWKP/), [IGVFFI7889TNAF](/sequence-files/IGVFFI7889TNAF/), [IGVFFI6541JGFZ](/sequence-files/IGVFFI6541JGFZ/), [IGVFFI6438LITQ](/sequence-files/IGVFFI6438LITQ/), [IGVFFI2174TQBM](/sequence-files/IGVFFI2174TQBM/), [IGVFFI7930PLEW](/sequence-files/IGVFFI7930PLEW/), [IGVFFI7370QYEK](/sequence-files/IGVFFI7370QYEK/), [IGVFFI2776LTMW](/sequence-files/IGVFFI2776LTMW/), [IGVFFI0945EJMP](/sequence-files/IGVFFI0945EJMP/), [IGVFFI2842EDJI](/sequence-files/IGVFFI2842EDJI/), [IGVFFI0813LGQI](/sequence-files/IGVFFI0813LGQI/), [IGVFFI6225GLFN](/sequence-files/IGVFFI6225GLFN/), [IGVFFI7356JDYX](/sequence-files/IGVFFI7356JDYX/), [IGVFFI2538CSOH](/sequence-files/IGVFFI2538CSOH/), [IGVFFI1608JBBS](/sequence-files/IGVFFI1608JBBS/), [IGVFFI7181WODT](/sequence-files/IGVFFI7181WODT/), [IGVFFI0225FNQX](/sequence-files/IGVFFI0225FNQX/), [IGVFFI7346XVXB](/sequence-files/IGVFFI7346XVXB/), [IGVFFI7237DJRH](/sequence-files/IGVFFI7237DJRH/), [IGVFFI5402XMEI](/sequence-files/IGVFFI5402XMEI/), [IGVFFI2152KHXJ](/sequence-files/IGVFFI2152KHXJ/), [IGVFFI6230OQLR](/sequence-files/IGVFFI6230OQLR/), [IGVFFI3420CNBD](/sequence-files/IGVFFI3420CNBD/), [IGVFFI3214JGEH](/sequence-files/IGVFFI3214JGEH/), [IGVFFI8214EBRF](/sequence-files/IGVFFI8214EBRF/), [IGVFFI4957DKGR](/sequence-files/IGVFFI4957DKGR/), [IGVFFI4426OOFF](/sequence-files/IGVFFI4426OOFF/), [IGVFFI1932APVQ](/sequence-files/IGVFFI1932APVQ/), [IGVFFI4683OAAI](/sequence-files/IGVFFI4683OAAI/), [IGVFFI8912ZZEC](/sequence-files/IGVFFI8912ZZEC/), [IGVFFI1409URYL](/sequence-files/IGVFFI1409URYL/), [IGVFFI1960GGTO](/sequence-files/IGVFFI1960GGTO/), [IGVFFI7494KNPP](/sequence-files/IGVFFI7494KNPP/), [IGVFFI4346HMWL](/sequence-files/IGVFFI4346HMWL/), [IGVFFI1261XJCS](/sequence-files/IGVFFI1261XJCS/), [IGVFFI3673JWHX](/sequence-files/IGVFFI3673JWHX/), [IGVFFI9059CEVY](/sequence-files/IGVFFI9059CEVY/), [IGVFFI4568EMWF](/sequence-files/IGVFFI4568EMWF/), [IGVFFI5846LIZE](/sequence-files/IGVFFI5846LIZE/), [IGVFFI1867GVHT](/sequence-files/IGVFFI1867GVHT/), [IGVFFI7064HJJK](/sequence-files/IGVFFI7064HJJK/), [IGVFFI3233UQOL](/sequence-files/IGVFFI3233UQOL/), [IGVFFI0664MBPI](/sequence-files/IGVFFI0664MBPI/), [IGVFFI0284ZTNM](/sequence-files/IGVFFI0284ZTNM/), [IGVFFI0927NXPV](/sequence-files/IGVFFI0927NXPV/), [IGVFFI9905VMGC](/sequence-files/IGVFFI9905VMGC/), [IGVFFI1972HVMR](/sequence-files/IGVFFI1972HVMR/) which do not have any `seqspecs`. Sequence files in a file set associated with bulk data are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS7403HHLV/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM4383GTZM](/in-vitro-systems/IGVFSM4383GTZM/) has in progress subobject construct library set [IGVFDS6982DESN](/construct-library-sets/IGVFDS6982DESN/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM4383GTZM/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM4383GTZM](/in-vitro-systems/IGVFSM4383GTZM/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM4383GTZM/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS7403HHLV](/measurement-sets/IGVFDS7403HHLV/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS7403HHLV/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS6982DESN/",
"accession": "IGVFDS6982DESN",
"file_set_type": "guide library",
"status": "in progress",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS5864UGFT/",
"accession": "IGVFDS5864UGFT",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-THP1-PE2_Exp2_NegControl_AmpliconSequencing"
],
"status": "released"
}
],
"control_for": [],
"creation_timestamp": "2023-11-30T22:49:38.741792+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI4126JRYP/",
"accession": "IGVFFI4126JRYP",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep5_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:19:46.224410+00:00",
"file_format": "fastq",
"file_size": 11161351,
"href": "/sequence-files/IGVFFI4126JRYP/@@download/IGVFFI4126JRYP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/1abb04b3-a3b1-4620-ad2a-d268d549a8e1/IGVFFI4126JRYP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep5_S77_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6753LWKP/",
"accession": "IGVFFI6753LWKP",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:15:26.987036+00:00",
"file_format": "fastq",
"file_size": 7838821,
"href": "/sequence-files/IGVFFI6753LWKP/@@download/IGVFFI6753LWKP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/599ad2ab-e2cb-41a0-bf46-feec0f74e435/IGVFFI6753LWKP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep1_S73_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7889TNAF/",
"accession": "IGVFFI7889TNAF",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:21:27.013078+00:00",
"file_format": "fastq",
"file_size": 7746336,
"href": "/sequence-files/IGVFFI7889TNAF/@@download/IGVFFI7889TNAF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/cbb8e134-24fb-4df6-ba12-ee482916f6e3/IGVFFI7889TNAF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep8_S80_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6541JGFZ/",
"accession": "IGVFFI6541JGFZ",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep3_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:18:09.500833+00:00",
"file_format": "fastq",
"file_size": 2551253,
"href": "/sequence-files/IGVFFI6541JGFZ/@@download/IGVFFI6541JGFZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/6b88f03a-3246-4c40-93fb-533d9e63124f/IGVFFI6541JGFZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep3_S75_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6438LITQ/",
"accession": "IGVFFI6438LITQ",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:18:35.992829+00:00",
"file_format": "fastq",
"file_size": 10646350,
"href": "/sequence-files/IGVFFI6438LITQ/@@download/IGVFFI6438LITQ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/32b79f2d-cb0d-4bea-8131-fa480f16536b/IGVFFI6438LITQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep3_S75_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2174TQBM/",
"accession": "IGVFFI2174TQBM",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep5_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:19:28.673494+00:00",
"file_format": "fastq",
"file_size": 2381587,
"href": "/sequence-files/IGVFFI2174TQBM/@@download/IGVFFI2174TQBM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/8a878068-4996-450b-b83d-519ce7673231/IGVFFI2174TQBM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep5_S77_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7930PLEW/",
"accession": "IGVFFI7930PLEW",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:19:55.142674+00:00",
"file_format": "fastq",
"file_size": 2605659,
"href": "/sequence-files/IGVFFI7930PLEW/@@download/IGVFFI7930PLEW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/1308d27d-7f44-44d8-b264-55fcf648c051/IGVFFI7930PLEW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep6_S78_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7370QYEK/",
"accession": "IGVFFI7370QYEK",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep6_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:20:03.912197+00:00",
"file_format": "fastq",
"file_size": 2283456,
"href": "/sequence-files/IGVFFI7370QYEK/@@download/IGVFFI7370QYEK.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/f5a0c71e-a0df-4a89-8f06-e4e3c6903e12/IGVFFI7370QYEK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep6_S78_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2776LTMW/",
"accession": "IGVFFI2776LTMW",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep9_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:22:11.578586+00:00",
"file_format": "fastq",
"file_size": 10206908,
"href": "/sequence-files/IGVFFI2776LTMW/@@download/IGVFFI2776LTMW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/3eda1fd6-ddb9-469f-a5fb-630ddb1d8815/IGVFFI2776LTMW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep9_S81_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0945EJMP/",
"accession": "IGVFFI0945EJMP",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep12_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:16:55.461023+00:00",
"file_format": "fastq",
"file_size": 2312573,
"href": "/sequence-files/IGVFFI0945EJMP/@@download/IGVFFI0945EJMP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/934e10ac-0900-4fbb-a921-498408564092/IGVFFI0945EJMP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep12_S84_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2842EDJI/",
"accession": "IGVFFI2842EDJI",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:21:35.898966+00:00",
"file_format": "fastq",
"file_size": 10732014,
"href": "/sequence-files/IGVFFI2842EDJI/@@download/IGVFFI2842EDJI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/09ba95e6-b751-4e63-a58c-6b7551aed716/IGVFFI2842EDJI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep8_S80_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0813LGQI/",
"accession": "IGVFFI0813LGQI",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:15:53.596493+00:00",
"file_format": "fastq",
"file_size": 2217240,
"href": "/sequence-files/IGVFFI0813LGQI/@@download/IGVFFI0813LGQI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/0ba18ab3-8abe-4dce-a27b-4797383b6516/IGVFFI0813LGQI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep10_S82_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6225GLFN/",
"accession": "IGVFFI6225GLFN",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep4_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:18:53.439671+00:00",
"file_format": "fastq",
"file_size": 2299547,
"href": "/sequence-files/IGVFFI6225GLFN/@@download/IGVFFI6225GLFN.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/a1745fb7-3edb-4eec-868b-9751136d348d/IGVFFI6225GLFN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep4_S76_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7356JDYX/",
"accession": "IGVFFI7356JDYX",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:20:59.690703+00:00",
"file_format": "fastq",
"file_size": 10738186,
"href": "/sequence-files/IGVFFI7356JDYX/@@download/IGVFFI7356JDYX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/ba67bf20-8e96-4a09-9768-22edd1ce1d48/IGVFFI7356JDYX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep7_S79_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2538CSOH/",
"accession": "IGVFFI2538CSOH",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep11_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:16:37.545209+00:00",
"file_format": "fastq",
"file_size": 7392037,
"href": "/sequence-files/IGVFFI2538CSOH/@@download/IGVFFI2538CSOH.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/4dd5ea03-aa64-4ba9-9910-cdb5825c1317/IGVFFI2538CSOH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep11_S83_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1608JBBS/",
"accession": "IGVFFI1608JBBS",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep1_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:15:35.883645+00:00",
"file_format": "fastq",
"file_size": 10855223,
"href": "/sequence-files/IGVFFI1608JBBS/@@download/IGVFFI1608JBBS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/ac9a4ea1-7d87-48a4-b010-9a4e9544fa17/IGVFFI1608JBBS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep1_S73_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7181WODT/",
"accession": "IGVFFI7181WODT",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep5_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:19:19.958481+00:00",
"file_format": "fastq",
"file_size": 2643148,
"href": "/sequence-files/IGVFFI7181WODT/@@download/IGVFFI7181WODT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/a183e381-bf25-43f4-b444-a2c4a3673274/IGVFFI7181WODT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep5_S77_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0225FNQX/",
"accession": "IGVFFI0225FNQX",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:15:44.935140+00:00",
"file_format": "fastq",
"file_size": 2503574,
"href": "/sequence-files/IGVFFI0225FNQX/@@download/IGVFFI0225FNQX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/d8e782b0-6a1d-449d-8b4f-1fae22e82898/IGVFFI0225FNQX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep10_S82_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7346XVXB/",
"accession": "IGVFFI7346XVXB",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep7_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:20:42.906432+00:00",
"file_format": "fastq",
"file_size": 2334320,
"href": "/sequence-files/IGVFFI7346XVXB/@@download/IGVFFI7346XVXB.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/996afb42-67e0-4929-9f12-9d23b7be1585/IGVFFI7346XVXB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep7_S79_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7237DJRH/",
"accession": "IGVFFI7237DJRH",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep11_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:16:20.220120+00:00",
"file_format": "fastq",
"file_size": 2436208,
"href": "/sequence-files/IGVFFI7237DJRH/@@download/IGVFFI7237DJRH.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/1ca4e3f3-30d7-4e51-b64a-4841fe3b8d28/IGVFFI7237DJRH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep11_S83_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5402XMEI/",
"accession": "IGVFFI5402XMEI",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:17:30.673149+00:00",
"file_format": "fastq",
"file_size": 2606499,
"href": "/sequence-files/IGVFFI5402XMEI/@@download/IGVFFI5402XMEI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/25472a92-c64a-4c82-8fe3-fed57ed7a402/IGVFFI5402XMEI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep2_S74_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2152KHXJ/",
"accession": "IGVFFI2152KHXJ",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep8_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:21:10.315709+00:00",
"file_format": "fastq",
"file_size": 2471363,
"href": "/sequence-files/IGVFFI2152KHXJ/@@download/IGVFFI2152KHXJ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/eabada66-3942-46dc-80b4-e37940dbc309/IGVFFI2152KHXJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep8_S80_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6230OQLR/",
"accession": "IGVFFI6230OQLR",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:19:10.836647+00:00",
"file_format": "fastq",
"file_size": 10766472,
"href": "/sequence-files/IGVFFI6230OQLR/@@download/IGVFFI6230OQLR.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/a7c31139-99b8-4177-864b-6b8ec16bd71c/IGVFFI6230OQLR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep4_S76_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3420CNBD/",
"accession": "IGVFFI3420CNBD",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep12_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:17:12.811858+00:00",
"file_format": "fastq",
"file_size": 6966145,
"href": "/sequence-files/IGVFFI3420CNBD/@@download/IGVFFI3420CNBD.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/2968ab1a-f72a-4154-a5a0-00afa6aa5f4a/IGVFFI3420CNBD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep12_S84_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3214JGEH/",
"accession": "IGVFFI3214JGEH",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:21:18.891066+00:00",
"file_format": "fastq",
"file_size": 2306349,
"href": "/sequence-files/IGVFFI3214JGEH/@@download/IGVFFI3214JGEH.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/978938ee-ef10-46fb-843d-60143c07f89a/IGVFFI3214JGEH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep8_S80_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8214EBRF/",
"accession": "IGVFFI8214EBRF",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:16:02.329796+00:00",
"file_format": "fastq",
"file_size": 7358628,
"href": "/sequence-files/IGVFFI8214EBRF/@@download/IGVFFI8214EBRF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/1fcedfc5-fc75-4957-aad7-232c93e3b9d5/IGVFFI8214EBRF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep10_S82_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4957DKGR/",
"accession": "IGVFFI4957DKGR",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:16:46.297317+00:00",
"file_format": "fastq",
"file_size": 10080547,
"href": "/sequence-files/IGVFFI4957DKGR/@@download/IGVFFI4957DKGR.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/515518f7-2753-42b4-bf58-69a626740d50/IGVFFI4957DKGR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep11_S83_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4426OOFF/",
"accession": "IGVFFI4426OOFF",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:17:39.347823+00:00",
"file_format": "fastq",
"file_size": 2334319,
"href": "/sequence-files/IGVFFI4426OOFF/@@download/IGVFFI4426OOFF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/4aa656be-2e08-4aa2-afcd-908d13070916/IGVFFI4426OOFF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep2_S74_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1932APVQ/",
"accession": "IGVFFI1932APVQ",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:16:11.100859+00:00",
"file_format": "fastq",
"file_size": 10196830,
"href": "/sequence-files/IGVFFI1932APVQ/@@download/IGVFFI1932APVQ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/437847c6-ece9-4bf5-b60a-e1ec4df1653f/IGVFFI1932APVQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep10_S82_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4683OAAI/",
"accession": "IGVFFI4683OAAI",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep3_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:18:18.149716+00:00",
"file_format": "fastq",
"file_size": 2283904,
"href": "/sequence-files/IGVFFI4683OAAI/@@download/IGVFFI4683OAAI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/88267efd-018d-4ac9-b195-4c5e0d59406d/IGVFFI4683OAAI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep3_S75_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8912ZZEC/",
"accession": "IGVFFI8912ZZEC",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep2_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:18:00.468579+00:00",
"file_format": "fastq",
"file_size": 10818071,
"href": "/sequence-files/IGVFFI8912ZZEC/@@download/IGVFFI8912ZZEC.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/b4272a32-9166-4b49-b847-5bf4ebf999c4/IGVFFI8912ZZEC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep2_S74_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1409URYL/",
"accession": "IGVFFI1409URYL",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep3_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:18:26.843286+00:00",
"file_format": "fastq",
"file_size": 7639462,
"href": "/sequence-files/IGVFFI1409URYL/@@download/IGVFFI1409URYL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/7611c735-8306-4041-9339-cb56961b0922/IGVFFI1409URYL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep3_S75_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1960GGTO/",
"accession": "IGVFFI1960GGTO",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:19:02.095589+00:00",
"file_format": "fastq",
"file_size": 7705434,
"href": "/sequence-files/IGVFFI1960GGTO/@@download/IGVFFI1960GGTO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/2a1b4f7f-bbd1-49b5-857d-02e39b6f7585/IGVFFI1960GGTO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep4_S76_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7494KNPP/",
"accession": "IGVFFI7494KNPP",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:15:09.454485+00:00",
"file_format": "fastq",
"file_size": 2575179,
"href": "/sequence-files/IGVFFI7494KNPP/@@download/IGVFFI7494KNPP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/4c045023-6459-4a10-940f-0dcaa61e0dcd/IGVFFI7494KNPP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep1_S73_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4346HMWL/",
"accession": "IGVFFI4346HMWL",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep9_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:21:45.468687+00:00",
"file_format": "fastq",
"file_size": 2470002,
"href": "/sequence-files/IGVFFI4346HMWL/@@download/IGVFFI4346HMWL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/a3a1a648-a86a-4f77-9411-b98f63fde245/IGVFFI4346HMWL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep9_S81_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1261XJCS/",
"accession": "IGVFFI1261XJCS",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:16:28.830893+00:00",
"file_format": "fastq",
"file_size": 2203903,
"href": "/sequence-files/IGVFFI1261XJCS/@@download/IGVFFI1261XJCS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/5d938f45-5f8d-44d1-8955-3bdffbdd58c6/IGVFFI1261XJCS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep11_S83_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3673JWHX/",
"accession": "IGVFFI3673JWHX",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:20:51.515245+00:00",
"file_format": "fastq",
"file_size": 7795482,
"href": "/sequence-files/IGVFFI3673JWHX/@@download/IGVFFI3673JWHX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/806f6772-aaf7-48f5-851e-6fbc4808d698/IGVFFI3673JWHX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep7_S79_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9059CEVY/",
"accession": "IGVFFI9059CEVY",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep6_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:20:21.575783+00:00",
"file_format": "fastq",
"file_size": 10506770,
"href": "/sequence-files/IGVFFI9059CEVY/@@download/IGVFFI9059CEVY.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/f18e1861-527c-4966-97dd-7a4232ac70cd/IGVFFI9059CEVY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep6_S78_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4568EMWF/",
"accession": "IGVFFI4568EMWF",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep2_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:17:51.664134+00:00",
"file_format": "fastq",
"file_size": 7854160,
"href": "/sequence-files/IGVFFI4568EMWF/@@download/IGVFFI4568EMWF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/f5536cc6-5aa3-4b03-bb59-c0059cf23787/IGVFFI4568EMWF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep2_S74_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5846LIZE/",
"accession": "IGVFFI5846LIZE",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep12_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:17:04.066185+00:00",
"file_format": "fastq",
"file_size": 2076999,
"href": "/sequence-files/IGVFFI5846LIZE/@@download/IGVFFI5846LIZE.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/814e0353-3726-44e0-8b0d-766cf7f0b021/IGVFFI5846LIZE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep12_S84_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1867GVHT/",
"accession": "IGVFFI1867GVHT",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:20:34.282243+00:00",
"file_format": "fastq",
"file_size": 2632022,
"href": "/sequence-files/IGVFFI1867GVHT/@@download/IGVFFI1867GVHT.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/aecd0999-5374-4558-ab9a-cc00ff62b5ca/IGVFFI1867GVHT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep7_S79_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7064HJJK/",
"accession": "IGVFFI7064HJJK",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:20:12.672280+00:00",
"file_format": "fastq",
"file_size": 7607195,
"href": "/sequence-files/IGVFFI7064HJJK/@@download/IGVFFI7064HJJK.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/545b75bb-8166-4bee-9066-4a7e5b333e3b/IGVFFI7064HJJK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep6_S78_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3233UQOL/",
"accession": "IGVFFI3233UQOL",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep4_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:18:44.855712+00:00",
"file_format": "fastq",
"file_size": 2560786,
"href": "/sequence-files/IGVFFI3233UQOL/@@download/IGVFFI3233UQOL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/47b6fffe-39e5-42d0-92d4-84b0e19aa290/IGVFFI3233UQOL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep4_S76_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0664MBPI/",
"accession": "IGVFFI0664MBPI",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:19:37.500723+00:00",
"file_format": "fastq",
"file_size": 7996311,
"href": "/sequence-files/IGVFFI0664MBPI/@@download/IGVFFI0664MBPI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/1df5bb1e-a236-4d28-8da4-95c76b6e8f28/IGVFFI0664MBPI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep5_S77_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0284ZTNM/",
"accession": "IGVFFI0284ZTNM",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep12_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:17:21.631615+00:00",
"file_format": "fastq",
"file_size": 9718660,
"href": "/sequence-files/IGVFFI0284ZTNM/@@download/IGVFFI0284ZTNM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/e65c7221-bbe1-4f6b-9440-d2eb5f37a11a/IGVFFI0284ZTNM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep12_S84_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0927NXPV/",
"accession": "IGVFFI0927NXPV",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep1_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:15:18.187765+00:00",
"file_format": "fastq",
"file_size": 2333252,
"href": "/sequence-files/IGVFFI0927NXPV/@@download/IGVFFI0927NXPV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/da245def-7d21-4b31-b109-c931d70915c7/IGVFFI0927NXPV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep1_S73_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9905VMGC/",
"accession": "IGVFFI9905VMGC",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep9_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:21:54.165017+00:00",
"file_format": "fastq",
"file_size": 2221135,
"href": "/sequence-files/IGVFFI9905VMGC/@@download/IGVFFI9905VMGC.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/19160b08-cef0-4b45-a5a2-55e017627626/IGVFFI9905VMGC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep9_S81_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1972HVMR/",
"accession": "IGVFFI1972HVMR",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:22:02.787549+00:00",
"file_format": "fastq",
"file_size": 7431162,
"href": "/sequence-files/IGVFFI1972HVMR/@@download/IGVFFI1972HVMR.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/05/87cbe0c8-f558-466f-bde8-0ddd5f10d670/IGVFFI1972HVMR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC-PCRrep9_S81_R1_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS3423PSID/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"release_timestamp": "2023-12-20T23:06:45.655094+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM4383GTZM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4383GTZM",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep2-BinC"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 51-75% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "26",
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2023-12-05T20:15:09.454485+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"PPIase F",
"peptidylprolyl isomerase F",
"Cyp-D",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIF",
"CyP-M",
"cyclophilin F",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"cyclophilin 3",
"cyclophilin D",
"rotamase F",
"mitochondrial cyclophilin",
"CypD",
"CYP3"
]
}
],
"uuid": "e0bd4ba1-42ff-4e27-8046-6193ef27b766"
}