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MeasurementSet
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IGVFDS7400VLBE
IGVFDS7400VLBE
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 176)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 424
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
36 items
1
2
3
4
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0429NDKR
fastq
reads
R2
8740
Read 2
IGVFFI3336ZRGG
Illumina NovaSeq X
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
IGVFFI0517LJQB
fastq
reads
I1
9124
Barcode index
IGVFFI6093GNRQ
Illumina NovaSeq X
22LMVNLT4
731 MB
Jason Buenrostro, Broad
validated
IGVFFI0861IYNY
fastq
reads
R2
8452
Read 2
IGVFFI8637MTTG
Illumina NovaSeq X
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
IGVFFI1143DMLU
fastq
reads
R2
4382
Read 2
IGVFFI3144JRDQ
Illumina NovaSeq 6000
H75F7DSX5
1.5 GB
Jason Buenrostro, Broad
validated
IGVFFI1154AFBV
fastq
reads
I1
3922
Barcode index
IGVFFI5288PGQH
Illumina NovaSeq X
22523KLT3
646 MB
Jason Buenrostro, Broad
validated
IGVFFI1321TWZQ
fastq
reads
I1
8932
Barcode index
IGVFFI5622APDH
Illumina NovaSeq X
22LMVNLT4
738 MB
Jason Buenrostro, Broad
validated
IGVFFI1659IEBP
fastq
reads
I1
8452
Barcode index
IGVFFI8637MTTG
Illumina NovaSeq X
22LMVNLT4
792 MB
Jason Buenrostro, Broad
validated
IGVFFI1701VLWN
fastq
reads
R1
8644
Read 1
IGVFFI1582ASUG
Illumina NovaSeq X
22LMVNLT4
1.3 GB
Jason Buenrostro, Broad
validated
IGVFFI1749SNEX
fastq
reads
R1
8452
Read 1
IGVFFI8637MTTG
Illumina NovaSeq X
22LMVNLT4
1.4 GB
Jason Buenrostro, Broad
validated
IGVFFI1965CBNG
fastq
reads
R2
9124
Read 2
IGVFFI6093GNRQ
Illumina NovaSeq X
22LMVNLT4
1.2 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM2983PFUY
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 176)
Donors
100 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0143YSWQ
buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
IGVFDO0144AKUR
buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
IGVFDO0166JLWT
buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
IGVFDO0186ZZOL
buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
IGVFDO0233FJJF
buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
IGVFDO0273LMQQ
buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
IGVFDO0285FFEG
buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
IGVFDO0392YIJG
buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0452ROLO
buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS2459NCPJ
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 255
Jason Buenrostro, Broad