{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7393LTPE",
"aliases": [
"bradley-bernstein:scATAC Lib 40",
"buenrostro-bernstein:scATAC Lib 40"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS7393LTPE](/measurement-sets/IGVFDS7393LTPE/) has sequence file(s): [IGVFFI2480FHUG](/sequence-files/IGVFFI2480FHUG/), [IGVFFI4232ELYH](/sequence-files/IGVFFI4232ELYH/), [IGVFFI8968ZITC](/sequence-files/IGVFFI8968ZITC/), [IGVFFI2949OANX](/sequence-files/IGVFFI2949OANX/), [IGVFFI9244COCH](/sequence-files/IGVFFI9244COCH/), [IGVFFI5265VJOY](/sequence-files/IGVFFI5265VJOY/), [IGVFFI6217DJQN](/sequence-files/IGVFFI6217DJQN/), [IGVFFI1701SKDZ](/sequence-files/IGVFFI1701SKDZ/), [IGVFFI4121VOGR](/sequence-files/IGVFFI4121VOGR/), [IGVFFI4387IQQB](/sequence-files/IGVFFI4387IQQB/), [IGVFFI7617BOFY](/sequence-files/IGVFFI7617BOFY/), [IGVFFI3710PXBS](/sequence-files/IGVFFI3710PXBS/), [IGVFFI9569NWUE](/sequence-files/IGVFFI9569NWUE/), [IGVFFI3981BTOH](/sequence-files/IGVFFI3981BTOH/), [IGVFFI0626LOUH](/sequence-files/IGVFFI0626LOUH/), [IGVFFI8761PUKA](/sequence-files/IGVFFI8761PUKA/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS7393LTPE/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM0835KPSB](/primary-cells/IGVFSM0835KPSB/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM0835KPSB/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS7393LTPE](/measurement-sets/IGVFDS7393LTPE/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS7393LTPE/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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}
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"aliases": [
"bradley-bernstein:BioSam 4566_SS-PKR 7",
"buenrostro-bernstein:BioSam 4566_SS-PKR 7"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 7), male, Homo sapiens (49 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:36:11.225622+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "7910d336-2517-45d9-8f82-7bbe6ea2c28d"
}