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MeasurementSet
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IGVFDS7365REMW
IGVFDS7365REMW
released
Json view
File Set Type
experimental data
Control Type
unsorted FACS input
Summary
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Assay Term
in vitro CRISPR screen using flow cytometry
Sample Summaries
Homo sapiens (male) THP-1 cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
Protocols
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
Aliases
jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep2-FACS_Input_AmpliconSequencing
Attribution
Jesse Engreitz, Stanford
(
HG011972
—
Jesse Engreitz
)
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2444ZRCB
fastq
reads
R1
2
Illumina NextSeq 550
GACCTAAC:ACTG
8.3 MB
Jesse Engreitz, Stanford
validated
IGVFFI2767SEET
fastq
reads
I2
2
Illumina NextSeq 550
GACCTAAC:ACTG
2.7 MB
Jesse Engreitz, Stanford
validated
IGVFFI2868QPVU
fastq
reads
R2
2
Illumina NextSeq 550
GACCTAAC:ACTG
16 MB
Jesse Engreitz, Stanford
validated
IGVFFI3587AGXB
fastq
reads
I2
2
Illumina NextSeq 550
GACCTAAC:TGAC
2.9 MB
Jesse Engreitz, Stanford
validated
IGVFFI4659RLHB
fastq
reads
R1
2
Illumina NextSeq 550
GACCTAAC:TGAC
8.5 MB
Jesse Engreitz, Stanford
validated
IGVFFI6535VGNK
fastq
reads
I1
2
Illumina NextSeq 550
GACCTAAC:TGAC
3.1 MB
Jesse Engreitz, Stanford
validated
IGVFFI8126WOAD
fastq
reads
I1
2
Illumina NextSeq 550
GACCTAAC:ACTG
2.9 MB
Jesse Engreitz, Stanford
validated
IGVFFI8703CHXH
fastq
reads
R2
2
Illumina NextSeq 550
GACCTAAC:TGAC
16 MB
Jesse Engreitz, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM3137EVKW
InVitroSystem
THP-1
IGVFDS6377KNCH
Homo sapiens (male) THP-1 cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO7359LVPI
igvf:donor_of_THP1
male
Homo sapiens
Associated Construct Library Sets
1 item
Accession
Summary
Library Design Files
IGVFDS6377KNCH
guide (sgRNA) library targeting sequence variants in a genomic locus
Control File Sets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6385JXFZ
MeasurementSet
untransfected prime editing Variant-EFFECTS
jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-THP1-PE2_Exp3_NegControl_AmpliconSequencing
Jesse Engreitz, Stanford
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5056OAGR
AnalysisSet
prime editing Variant-EFFECTS targeting PPIF: variant effects
jesse-engreitz:PPIF_promoter_8mer_insertion_THP1_Variant-FlowFISH_analysis
Jesse Engreitz, Stanford