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IGVFDS7331YEQR

released
GRU
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 184)
Protocols
Aliases
buenrostro-bernstein:scATAC Lib 470
Submitter Comment
Does not have corresponding scRNA seq MeasurementSet due to failed QC
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

30 items
Read Names
fastq
reads
R1
808
Read 1
22773CLT3
1.8 GB
Jason Buenrostro, Broad
validated
fastq
reads
I1
8492
Barcode index
22LMVNLT4
444 MB
Jason Buenrostro, Broad
validated
fastq
reads
I1
8972
Barcode index
22LMVNLT4
410 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
808
Read 2
22773CLT3
809 MB
Jason Buenrostro, Broad
validated
fastq
reads
I1
9164
Barcode index
22LMVNLT4
400 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8588
Read 2
22LMVNLT4
610 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
8876
Read 1
22LMVNLT4
692 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
8780
Read 1
22LMVNLT4
684 MB
Jason Buenrostro, Broad
validated
fastq
reads
R1
8684
Read 1
22LMVNLT4
688 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8876
Read 2
22LMVNLT4
624 MB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to hepatic oval stem cell for 7 days (cellular sub pool: SS-PKR 184)

Donors

100 items
Aliases
  • buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens