IGVFDS7221AXOO

1{
2    "@context": "/terms/",
3    "@id": "/measurement-sets/IGVFDS7221AXOO/",
4    "@type": [
5        "MeasurementSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS7221AXOO",
10    "aliases": [
11        "maya-kasowski:10X_multiome_snRNA"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0003109/",
15        "assay_slims": [
16            "gene expression"
17        ],
18        "status": "released",
19        "term_name": "single-nucleus RNA sequencing assay"
20    },
21    "audit": {
22        "NOT_COMPLIANT": [
23            {
24                "category": "missing sequence specification",
25                "detail": "Measurement set [IGVFDS7221AXOO](/measurement-sets/IGVFDS7221AXOO/) has sequence file(s): [IGVFFI5950OTUK](/sequence-files/IGVFFI5950OTUK/), [IGVFFI5449LCEU](/sequence-files/IGVFFI5449LCEU/), [IGVFFI1258FLKP](/sequence-files/IGVFFI1258FLKP/), [IGVFFI4213LAQB](/sequence-files/IGVFFI4213LAQB/), [IGVFFI9606DNNW](/sequence-files/IGVFFI9606DNNW/), [IGVFFI2836MISK](/sequence-files/IGVFFI2836MISK/), [IGVFFI3789GZNR](/sequence-files/IGVFFI3789GZNR/), [IGVFFI0348PHGX](/sequence-files/IGVFFI0348PHGX/), [IGVFFI2381HQQC](/sequence-files/IGVFFI2381HQQC/), [IGVFFI1285OXKX](/sequence-files/IGVFFI1285OXKX/), [IGVFFI8370NDRH](/sequence-files/IGVFFI8370NDRH/), [IGVFFI6765TVKB](/sequence-files/IGVFFI6765TVKB/), [IGVFFI9791TAHS](/sequence-files/IGVFFI9791TAHS/), [IGVFFI9315JOEV](/sequence-files/IGVFFI9315JOEV/), [IGVFFI3690HGEN](/sequence-files/IGVFFI3690HGEN/), [IGVFFI8062BQGT](/sequence-files/IGVFFI8062BQGT/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
26                "level": 50,
27                "level_name": "NOT_COMPLIANT",
28                "name": "audit_missing_seqspec",
29                "path": "/measurement-sets/IGVFDS7221AXOO/"
30            },
31            {
32                "category": "missing strand specificity",
33                "detail": "Measurement set [IGVFDS7221AXOO](/measurement-sets/IGVFDS7221AXOO/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
34                "level": 50,
35                "level_name": "NOT_COMPLIANT",
36                "name": "audit_missing_strand_specificity",
37                "path": "/measurement-sets/IGVFDS7221AXOO/"
38            }
39        ],
40        "WARNING": [
41            {
42                "category": "missing analysis",
43                "detail": "Measurement set [IGVFDS7221AXOO](/measurement-sets/IGVFDS7221AXOO/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
44                "level": 40,
45                "level_name": "WARNING",
46                "name": "audit_input_for",
47                "path": "/measurement-sets/IGVFDS7221AXOO/"
48            }
49        ]
50    },
51    "award": {
52        "@id": "/awards/HG012076/",
53        "component": "mapping",
54        "contact_pi": {
55            "@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
56            "title": "Ansuman Satpathy"
57        },
58        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
59    },
60    "control_for": [],
61    "controlled_access": true,
62    "creation_timestamp": "2025-03-06T03:02:05.175020+00:00",
63    "data_use_limitation_summaries": [
64        "GRU"
65    ],
66    "donors": [
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68            "@id": "/human-donors/IGVFDO3656DWZS/",
69            "accession": "IGVFDO3656DWZS",
70            "aliases": [
71                "maya-kasowski:donor_4080"
72            ],
73            "sex": "female",
74            "status": "released",
75            "taxa": "Homo sapiens"
76        },
77        {
78            "@id": "/human-donors/IGVFDO5779BART/",
79            "accession": "IGVFDO5779BART",
80            "aliases": [
81                "maya-kasowski:donor_4535"
82            ],
83            "sex": "male",
84            "status": "released",
85            "taxa": "Homo sapiens"
86        },
87        {
88            "@id": "/human-donors/IGVFDO1836DUYP/",
89            "accession": "IGVFDO1836DUYP",
90            "aliases": [
91                "maya-kasowski:donor_4089"
92            ],
93            "sex": "unspecified",
94            "status": "released",
95            "taxa": "Homo sapiens"
96        },
97        {
98            "@id": "/human-donors/IGVFDO7396NRBT/",
99            "accession": "IGVFDO7396NRBT",
100            "aliases": [
101                "maya-kasowski:donor_4102"
102            ],
103            "sex": "unspecified",
104            "status": "released",
105            "taxa": "Homo sapiens"
106        },
107        {
108            "@id": "/human-donors/IGVFDO9834PLUM/",
109            "accession": "IGVFDO9834PLUM",
110            "aliases": [
111                "maya-kasowski:donor_4268"
112            ],
113            "sex": "female",
114            "status": "released",
115            "taxa": "Homo sapiens"
116        },
117        {
118            "@id": "/human-donors/IGVFDO9663VUZC/",
119            "accession": "IGVFDO9663VUZC",
120            "aliases": [
121                "maya-kasowski:donor_4232"
122            ],
123            "sex": "unspecified",
124            "status": "released",
125            "taxa": "Homo sapiens"
126        },
127        {
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130            "aliases": [
131                "maya-kasowski:donor_4463"
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134            "status": "released",
135            "taxa": "Homo sapiens"
136        },
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140            "aliases": [
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144            "status": "released",
145            "taxa": "Homo sapiens"
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150            "aliases": [
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154            "status": "released",
155            "taxa": "Homo sapiens"
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160            "aliases": [
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165            "taxa": "Homo sapiens"
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175            "taxa": "Homo sapiens"
176        },
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186        },
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205            "taxa": "Homo sapiens"
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216        },
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225            "taxa": "Homo sapiens"
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286        }
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295                "maya-kasowski:10X_multiome_snRNA_lane3_I2"
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471                "maya-kasowski:10X_multiome_snRNA_lane1_R1"
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