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IGVFDS7168ZWPA

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples
Protocols
Aliases
igvf:corces_measurementSet_X050_G3_RNA

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R2
1
Read 2
2257GYLT3
6
2.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
2257GYLT3
8
2.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
2257GYLT3
6
373 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
2257GYLT3
5
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
2257GYLT3
8
1.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
2257GYLT3
8
357 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
2257GYLT3
8
325 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
2257GYLT3
5
378 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
2257GYLT3
7
367 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
2257GYLT3
7
333 MB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples

Donors

10 items
Aliases
  • igvf:corces_donor_BANN1973
male
Homo sapiens
  • igvf:corces_donor_BANN2103
male
Homo sapiens
  • igvf:corces_donor_BANN2057
male
Homo sapiens
  • igvf:corces_donor_BANN1632
male
Homo sapiens
  • igvf:corces_donor_BANN1858
male
Homo sapiens
  • igvf:corces_donor_BANN0124
male
Homo sapiens
  • igvf:corces_donor_BANN1639
male
Homo sapiens
  • igvf:corces_donor_BANN1614
male
Homo sapiens
  • igvf:corces_donor_BANN1349
female
Homo sapiens
  • igvf:corces_donor_BANN0227
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_X050_G3_ATAC
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF