{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7166DZRK",
"aliases": [
"bradley-bernstein:scRNA Lib 20",
"buenrostro-bernstein:scRNA Lib 20"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
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"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS7166DZRK](/measurement-sets/IGVFDS7166DZRK/) has sequence file(s): [IGVFFI6592AKSC](/sequence-files/IGVFFI6592AKSC/), [IGVFFI2928WKAA](/sequence-files/IGVFFI2928WKAA/), [IGVFFI5442RDRQ](/sequence-files/IGVFFI5442RDRQ/), [IGVFFI2800AWIZ](/sequence-files/IGVFFI2800AWIZ/), [IGVFFI7645HSVZ](/sequence-files/IGVFFI7645HSVZ/), [IGVFFI2414GDJM](/sequence-files/IGVFFI2414GDJM/), [IGVFFI3979NRHI](/sequence-files/IGVFFI3979NRHI/), [IGVFFI4750VEXI](/sequence-files/IGVFFI4750VEXI/), [IGVFFI5681HYFL](/sequence-files/IGVFFI5681HYFL/), [IGVFFI0442WRME](/sequence-files/IGVFFI0442WRME/), [IGVFFI6805UTSE](/sequence-files/IGVFFI6805UTSE/), [IGVFFI9700GKFS](/sequence-files/IGVFFI9700GKFS/), [IGVFFI2508EBTV](/sequence-files/IGVFFI2508EBTV/), [IGVFFI6826DYNZ](/sequence-files/IGVFFI6826DYNZ/), [IGVFFI7743WRLD](/sequence-files/IGVFFI7743WRLD/), [IGVFFI6360FMXC](/sequence-files/IGVFFI6360FMXC/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS7166DZRK/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM1964TYMX](/primary-cells/IGVFSM1964TYMX/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM1964TYMX/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS7166DZRK](/measurement-sets/IGVFDS7166DZRK/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS7166DZRK/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"@id": "/sample-terms/UBERON_0002371/",
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"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 4), female, Homo sapiens (19 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:25:25.710061+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "614a3a2f-6de6-439c-a457-51134610b171"
}