{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS7163VHFR/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7163VHFR",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep4-BinD_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM8534PHPO](/in-vitro-systems/IGVFSM8534PHPO/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM8534PHPO/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS7163VHFR](/measurement-sets/IGVFDS7163VHFR/) has sequence file(s) [IGVFFI2749KREX](/sequence-files/IGVFFI2749KREX/), [IGVFFI2460WNXJ](/sequence-files/IGVFFI2460WNXJ/), [IGVFFI3807TGBU](/sequence-files/IGVFFI3807TGBU/), [IGVFFI6807MGIS](/sequence-files/IGVFFI6807MGIS/), [IGVFFI7392YHPQ](/sequence-files/IGVFFI7392YHPQ/), [IGVFFI1780KKOS](/sequence-files/IGVFFI1780KKOS/), [IGVFFI4236FZZI](/sequence-files/IGVFFI4236FZZI/), [IGVFFI1200UTGE](/sequence-files/IGVFFI1200UTGE/), [IGVFFI8878EWVW](/sequence-files/IGVFFI8878EWVW/), [IGVFFI5638URJE](/sequence-files/IGVFFI5638URJE/), [IGVFFI0663MSMB](/sequence-files/IGVFFI0663MSMB/), [IGVFFI2074UPYM](/sequence-files/IGVFFI2074UPYM/), [IGVFFI5367AKQK](/sequence-files/IGVFFI5367AKQK/), [IGVFFI0931WHQH](/sequence-files/IGVFFI0931WHQH/), [IGVFFI8076ZQWY](/sequence-files/IGVFFI8076ZQWY/), [IGVFFI3293BVNE](/sequence-files/IGVFFI3293BVNE/), [IGVFFI7495CDOL](/sequence-files/IGVFFI7495CDOL/), [IGVFFI3329KGJC](/sequence-files/IGVFFI3329KGJC/), [IGVFFI5082NRLZ](/sequence-files/IGVFFI5082NRLZ/), [IGVFFI9875MXGG](/sequence-files/IGVFFI9875MXGG/), [IGVFFI7654ERMN](/sequence-files/IGVFFI7654ERMN/), [IGVFFI5274IPRI](/sequence-files/IGVFFI5274IPRI/), [IGVFFI1524NZVU](/sequence-files/IGVFFI1524NZVU/), [IGVFFI5539VTNZ](/sequence-files/IGVFFI5539VTNZ/), [IGVFFI0108HIDZ](/sequence-files/IGVFFI0108HIDZ/), [IGVFFI4483PGZB](/sequence-files/IGVFFI4483PGZB/), [IGVFFI8464HAXP](/sequence-files/IGVFFI8464HAXP/), [IGVFFI4594DJSZ](/sequence-files/IGVFFI4594DJSZ/), [IGVFFI2052JUGS](/sequence-files/IGVFFI2052JUGS/), [IGVFFI8900NOBX](/sequence-files/IGVFFI8900NOBX/), [IGVFFI0145AGBT](/sequence-files/IGVFFI0145AGBT/), [IGVFFI0742VHSS](/sequence-files/IGVFFI0742VHSS/), [IGVFFI4636SPYA](/sequence-files/IGVFFI4636SPYA/), [IGVFFI8292TRDJ](/sequence-files/IGVFFI8292TRDJ/), [IGVFFI4330GXJW](/sequence-files/IGVFFI4330GXJW/), [IGVFFI4702ZRCF](/sequence-files/IGVFFI4702ZRCF/), [IGVFFI5983UTXX](/sequence-files/IGVFFI5983UTXX/), [IGVFFI2202IWAB](/sequence-files/IGVFFI2202IWAB/), [IGVFFI6210ICND](/sequence-files/IGVFFI6210ICND/), [IGVFFI3045PEFU](/sequence-files/IGVFFI3045PEFU/), [IGVFFI9633YUAH](/sequence-files/IGVFFI9633YUAH/), [IGVFFI7742QOLR](/sequence-files/IGVFFI7742QOLR/), [IGVFFI4634CIEF](/sequence-files/IGVFFI4634CIEF/), [IGVFFI7881HDXU](/sequence-files/IGVFFI7881HDXU/), [IGVFFI8163LZNL](/sequence-files/IGVFFI8163LZNL/), [IGVFFI0749NNEU](/sequence-files/IGVFFI0749NNEU/), [IGVFFI8982OHCR](/sequence-files/IGVFFI8982OHCR/), [IGVFFI2373CBGF](/sequence-files/IGVFFI2373CBGF/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS7163VHFR/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS7163VHFR](/measurement-sets/IGVFDS7163VHFR/) has sequence file(s): [IGVFFI2749KREX](/sequence-files/IGVFFI2749KREX/), [IGVFFI2460WNXJ](/sequence-files/IGVFFI2460WNXJ/), [IGVFFI3807TGBU](/sequence-files/IGVFFI3807TGBU/), [IGVFFI6807MGIS](/sequence-files/IGVFFI6807MGIS/), [IGVFFI7392YHPQ](/sequence-files/IGVFFI7392YHPQ/), [IGVFFI1780KKOS](/sequence-files/IGVFFI1780KKOS/), [IGVFFI4236FZZI](/sequence-files/IGVFFI4236FZZI/), [IGVFFI1200UTGE](/sequence-files/IGVFFI1200UTGE/), [IGVFFI8878EWVW](/sequence-files/IGVFFI8878EWVW/), [IGVFFI5638URJE](/sequence-files/IGVFFI5638URJE/), [IGVFFI0663MSMB](/sequence-files/IGVFFI0663MSMB/), [IGVFFI2074UPYM](/sequence-files/IGVFFI2074UPYM/), [IGVFFI5367AKQK](/sequence-files/IGVFFI5367AKQK/), [IGVFFI0931WHQH](/sequence-files/IGVFFI0931WHQH/), [IGVFFI8076ZQWY](/sequence-files/IGVFFI8076ZQWY/), [IGVFFI3293BVNE](/sequence-files/IGVFFI3293BVNE/), [IGVFFI7495CDOL](/sequence-files/IGVFFI7495CDOL/), [IGVFFI3329KGJC](/sequence-files/IGVFFI3329KGJC/), [IGVFFI5082NRLZ](/sequence-files/IGVFFI5082NRLZ/), [IGVFFI9875MXGG](/sequence-files/IGVFFI9875MXGG/), [IGVFFI7654ERMN](/sequence-files/IGVFFI7654ERMN/), [IGVFFI5274IPRI](/sequence-files/IGVFFI5274IPRI/), [IGVFFI1524NZVU](/sequence-files/IGVFFI1524NZVU/), [IGVFFI5539VTNZ](/sequence-files/IGVFFI5539VTNZ/), [IGVFFI0108HIDZ](/sequence-files/IGVFFI0108HIDZ/), [IGVFFI4483PGZB](/sequence-files/IGVFFI4483PGZB/), [IGVFFI8464HAXP](/sequence-files/IGVFFI8464HAXP/), [IGVFFI4594DJSZ](/sequence-files/IGVFFI4594DJSZ/), [IGVFFI2052JUGS](/sequence-files/IGVFFI2052JUGS/), [IGVFFI8900NOBX](/sequence-files/IGVFFI8900NOBX/), [IGVFFI0145AGBT](/sequence-files/IGVFFI0145AGBT/), [IGVFFI0742VHSS](/sequence-files/IGVFFI0742VHSS/), [IGVFFI4636SPYA](/sequence-files/IGVFFI4636SPYA/), [IGVFFI8292TRDJ](/sequence-files/IGVFFI8292TRDJ/), [IGVFFI4330GXJW](/sequence-files/IGVFFI4330GXJW/), [IGVFFI4702ZRCF](/sequence-files/IGVFFI4702ZRCF/), [IGVFFI5983UTXX](/sequence-files/IGVFFI5983UTXX/), [IGVFFI2202IWAB](/sequence-files/IGVFFI2202IWAB/), [IGVFFI6210ICND](/sequence-files/IGVFFI6210ICND/), [IGVFFI3045PEFU](/sequence-files/IGVFFI3045PEFU/), [IGVFFI9633YUAH](/sequence-files/IGVFFI9633YUAH/), [IGVFFI7742QOLR](/sequence-files/IGVFFI7742QOLR/), [IGVFFI4634CIEF](/sequence-files/IGVFFI4634CIEF/), [IGVFFI7881HDXU](/sequence-files/IGVFFI7881HDXU/), [IGVFFI8163LZNL](/sequence-files/IGVFFI8163LZNL/), [IGVFFI0749NNEU](/sequence-files/IGVFFI0749NNEU/), [IGVFFI8982OHCR](/sequence-files/IGVFFI8982OHCR/), [IGVFFI2373CBGF](/sequence-files/IGVFFI2373CBGF/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS7163VHFR/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS7163VHFR](/measurement-sets/IGVFDS7163VHFR/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS7163VHFR/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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{
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"accession": "IGVFDS4869FXYY",
"aliases": [
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],
"status": "released"
}
],
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"creation_timestamp": "2023-12-13T08:48:15.791376+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO1080XFGV/",
"accession": "IGVFDO1080XFGV",
"aliases": [
"igvf:donor_of_Jurkat"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
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},
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},
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{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "db72b3c4-daf7-4c01-ae5a-27a4a79c197f"
}