IGVFDS7161RJGI

released
{
    "@context": "/terms/",
    "@id": "/measurement-sets/IGVFDS7161RJGI/",
    "@type": [
        "MeasurementSet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS7161RJGI",
    "aliases": [
        "ansuman-satpathy:snATAC-seq_igvf12_10x6"
    ],
    "assay_term": {
        "@id": "/assay-terms/OBI_0002762/",
        "assay_slims": [
            "chromatin accessibility"
        ],
        "status": "released",
        "term_name": "single-nucleus ATAC-seq"
    },
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released multiplexed sample [IGVFSM5574TAPU](/multiplexed-samples/IGVFSM5574TAPU/) has in progress subobject tabular file [IGVFFI6870GMPP](/tabular-files/IGVFFI6870GMPP/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/multiplexed-samples/IGVFSM5574TAPU/"
            }
        ]
    },
    "auxiliary_sets": [
        {
            "@id": "/auxiliary-sets/IGVFDS5700OHED/",
            "accession": "IGVFDS5700OHED",
            "aliases": [
                "ansuman-satpathy:multiseq_igvf12_10x6"
            ],
            "file_set_type": "lipid-conjugated oligo sequencing",
            "status": "released"
        }
    ],
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping",
        "contact_pi": {
            "@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
            "title": "Ansuman Satpathy"
        },
        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
    },
    "control_for": [],
    "controlled_access": true,
    "creation_timestamp": "2024-07-23T20:58:56.273078+00:00",
    "data_use_limitation_summaries": [
        "GRU"
    ],
    "donors": [
        {
            "@id": "/human-donors/IGVFDO1264SGCS/",
            "accession": "IGVFDO1264SGCS",
            "aliases": [
                "ansuman-satpathy:bridge_bone_marrow_donor_2038"
            ],
            "sex": "male",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO0938OYMI/",
            "accession": "IGVFDO0938OYMI",
            "aliases": [
                "ansuman-satpathy:singh_bcell_donor_2"
            ],
            "sex": "female",
            "status": "released",
            "taxa": "Homo sapiens"
        },
        {
            "@id": "/human-donors/IGVFDO1718HCES/",
            "accession": "IGVFDO1718HCES",
            "aliases": [
                "ansuman-satpathy:singh_bcell_donor_1"
            ],
            "sex": "male",
            "status": "released",
            "taxa": "Homo sapiens"
        }
    ],
    "externally_hosted": false,
    "file_set_type": "experimental data",
    "files": [
        {
            "@id": "/sequence-files/IGVFFI7071UAGG/",
            "accession": "IGVFFI7071UAGG",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS1_r1"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:13:12.591920+00:00",
            "file_format": "fastq",
            "file_size": 5964527829,
            "href": "/sequence-files/IGVFFI7071UAGG/@@download/IGVFFI7071UAGG.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/f29291d1-9d8b-4e0d-a94e-dafc50e79ac7/IGVFFI7071UAGG.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L003_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2909OQKE/",
            "accession": "IGVFFI2909OQKE",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS7_i1"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T01:05:10.687189+00:00",
            "file_format": "fastq",
            "file_size": 1360221564,
            "href": "/sequence-files/IGVFFI2909OQKE/@@download/IGVFFI2909OQKE.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/14bd6ef9-e6bc-46df-9753-22623943a98b/IGVFFI2909OQKE.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S25_L008_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI1889IRQS/",
            "accession": "IGVFFI1889IRQS",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS1_i1"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:12:06.270155+00:00",
            "file_format": "fastq",
            "file_size": 1374881857,
            "href": "/sequence-files/IGVFFI1889IRQS/@@download/IGVFFI1889IRQS.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/1db2f070-b738-4576-95dc-f174754b02ac/IGVFFI1889IRQS.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L003_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9613PAWJ/",
            "accession": "IGVFFI9613PAWJ",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS1_r2"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:14:59.507058+00:00",
            "file_format": "fastq",
            "file_size": 3285425784,
            "href": "/sequence-files/IGVFFI9613PAWJ/@@download/IGVFFI9613PAWJ.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/74e4edd9-34d1-477c-81d2-fdc8fce1ed59/IGVFFI9613PAWJ.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L003_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI0561OEQR/",
            "accession": "IGVFFI0561OEQR",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS2_i1"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:17:52.172733+00:00",
            "file_format": "fastq",
            "file_size": 1374268095,
            "href": "/sequence-files/IGVFFI0561OEQR/@@download/IGVFFI0561OEQR.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/f86ee42b-6a96-4117-9bac-4acc3ca91b1b/IGVFFI0561OEQR.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L004_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI1812ZLAL/",
            "accession": "IGVFFI1812ZLAL",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS1_r3"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:16:14.190129+00:00",
            "file_format": "fastq",
            "file_size": 5960994536,
            "href": "/sequence-files/IGVFFI1812ZLAL/@@download/IGVFFI1812ZLAL.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/f7cb7855-0e49-4e1e-adf7-2c0ce8bfb21f/IGVFFI1812ZLAL.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L003_R3_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI7308MLIP/",
            "accession": "IGVFFI7308MLIP",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS2_r1"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:18:46.239481+00:00",
            "file_format": "fastq",
            "file_size": 5981698425,
            "href": "/sequence-files/IGVFFI7308MLIP/@@download/IGVFFI7308MLIP.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/dc394701-ca22-429f-88a4-977fdaa350a7/IGVFFI7308MLIP.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L004_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI8776YRYP/",
            "accession": "IGVFFI8776YRYP",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS2_r3"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:22:00.826092+00:00",
            "file_format": "fastq",
            "file_size": 5975958288,
            "href": "/sequence-files/IGVFFI8776YRYP/@@download/IGVFFI8776YRYP.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/51acfa53-2d67-43f1-b406-4d22ca25eb3b/IGVFFI8776YRYP.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L004_R3_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI3236FNPA/",
            "accession": "IGVFFI3236FNPA",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS2_r2"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:20:13.251812+00:00",
            "file_format": "fastq",
            "file_size": 3292158068,
            "href": "/sequence-files/IGVFFI3236FNPA/@@download/IGVFFI3236FNPA.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/81079357-e0d3-41c6-a2d4-869e2f47d0d5/IGVFFI3236FNPA.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L004_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI3047IBYN/",
            "accession": "IGVFFI3047IBYN",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS3_r1"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:23:20.266562+00:00",
            "file_format": "fastq",
            "file_size": 5957192325,
            "href": "/sequence-files/IGVFFI3047IBYN/@@download/IGVFFI3047IBYN.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/aa8d70c7-48f2-4aa9-85e1-1da7996554ae/IGVFFI3047IBYN.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L005_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI4690UVPB/",
            "accession": "IGVFFI4690UVPB",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS3_i1"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:22:49.038295+00:00",
            "file_format": "fastq",
            "file_size": 1367404848,
            "href": "/sequence-files/IGVFFI4690UVPB/@@download/IGVFFI4690UVPB.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/af11b4ea-0088-4437-a1ed-bf3ea87aac70/IGVFFI4690UVPB.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L005_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2750KMAK/",
            "accession": "IGVFFI2750KMAK",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS4_i1"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:25:34.622255+00:00",
            "file_format": "fastq",
            "file_size": 1362181378,
            "href": "/sequence-files/IGVFFI2750KMAK/@@download/IGVFFI2750KMAK.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/35b10f71-538d-471e-aab4-835ac1034ad7/IGVFFI2750KMAK.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L006_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9899URWE/",
            "accession": "IGVFFI9899URWE",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS5_r1"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:28:57.434006+00:00",
            "file_format": "fastq",
            "file_size": 6049173697,
            "href": "/sequence-files/IGVFFI9899URWE/@@download/IGVFFI9899URWE.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/8ad76ba9-d317-412e-8445-17cfa291bb46/IGVFFI9899URWE.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L007_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI0499TJYD/",
            "accession": "IGVFFI0499TJYD",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS3_r2"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:24:08.867194+00:00",
            "file_format": "fastq",
            "file_size": 3273151204,
            "href": "/sequence-files/IGVFFI0499TJYD/@@download/IGVFFI0499TJYD.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/21324ae7-dc6e-4c45-90f2-0a9f296412c6/IGVFFI0499TJYD.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L005_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2834YAGR/",
            "accession": "IGVFFI2834YAGR",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS3_r3"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:24:49.829102+00:00",
            "file_format": "fastq",
            "file_size": 5943462625,
            "href": "/sequence-files/IGVFFI2834YAGR/@@download/IGVFFI2834YAGR.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/7e809f8b-918f-4b38-bddd-96fe7be52e29/IGVFFI2834YAGR.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L005_R3_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI8352SPBW/",
            "accession": "IGVFFI8352SPBW",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS4_r2"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:26:57.739911+00:00",
            "file_format": "fastq",
            "file_size": 3263000828,
            "href": "/sequence-files/IGVFFI8352SPBW/@@download/IGVFFI8352SPBW.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/1c307715-82f3-44f3-9cdc-1e286d0ccc0a/IGVFFI8352SPBW.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L006_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI3664OPBX/",
            "accession": "IGVFFI3664OPBX",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS4_r1"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:26:06.778675+00:00",
            "file_format": "fastq",
            "file_size": 5948001253,
            "href": "/sequence-files/IGVFFI3664OPBX/@@download/IGVFFI3664OPBX.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/1f3ed04b-17d5-43a0-9d38-03e88bdd95bb/IGVFFI3664OPBX.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L006_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6025OIFX/",
            "accession": "IGVFFI6025OIFX",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS4_r3"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:27:38.477699+00:00",
            "file_format": "fastq",
            "file_size": 5925479895,
            "href": "/sequence-files/IGVFFI6025OIFX/@@download/IGVFFI6025OIFX.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/56b7386d-2d65-48e8-865d-3d6e6ce7d3cb/IGVFFI6025OIFX.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L006_R3_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI1521PFNR/",
            "accession": "IGVFFI1521PFNR",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS5_i1"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:28:25.558760+00:00",
            "file_format": "fastq",
            "file_size": 1372410051,
            "href": "/sequence-files/IGVFFI1521PFNR/@@download/IGVFFI1521PFNR.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/57ae781d-8d50-4000-84f4-ca1be3c1bdf1/IGVFFI1521PFNR.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L007_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6873JKRT/",
            "accession": "IGVFFI6873JKRT",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS6_i1"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:31:10.565585+00:00",
            "file_format": "fastq",
            "file_size": 1369630902,
            "href": "/sequence-files/IGVFFI6873JKRT/@@download/IGVFFI6873JKRT.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/41623980-7463-4cd5-811d-5508c4b712f5/IGVFFI6873JKRT.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S25_L007_I1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI3433BRWC/",
            "accession": "IGVFFI3433BRWC",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS5_r2"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:29:45.337262+00:00",
            "file_format": "fastq",
            "file_size": 3325319175,
            "href": "/sequence-files/IGVFFI3433BRWC/@@download/IGVFFI3433BRWC.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/35f28494-1b14-445b-911c-cd10ec5088c4/IGVFFI3433BRWC.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L007_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI3893DRJR/",
            "accession": "IGVFFI3893DRJR",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS7_r3"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T01:06:57.855264+00:00",
            "file_format": "fastq",
            "file_size": 6059425549,
            "href": "/sequence-files/IGVFFI3893DRJR/@@download/IGVFFI3893DRJR.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/6a4e77a7-a7dc-48c5-8635-fefc04b6d59a/IGVFFI3893DRJR.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S25_L008_R3_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI8991HSQL/",
            "accession": "IGVFFI8991HSQL",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS5_r3"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:30:24.610696+00:00",
            "file_format": "fastq",
            "file_size": 6026310516,
            "href": "/sequence-files/IGVFFI8991HSQL/@@download/IGVFFI8991HSQL.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/a3666340-046c-438e-8b19-2c5ce673e581/IGVFFI8991HSQL.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S10_L007_R3_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI4142UBHV/",
            "accession": "IGVFFI4142UBHV",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS6_r1"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T00:31:40.462815+00:00",
            "file_format": "fastq",
            "file_size": 6088476325,
            "href": "/sequence-files/IGVFFI4142UBHV/@@download/IGVFFI4142UBHV.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/77503311-efcc-4559-a5bf-5723a037a43f/IGVFFI4142UBHV.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S25_L007_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2563YLKP/",
            "accession": "IGVFFI2563YLKP",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS6_r2"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T01:04:10.425740+00:00",
            "file_format": "fastq",
            "file_size": 3318731470,
            "href": "/sequence-files/IGVFFI2563YLKP/@@download/IGVFFI2563YLKP.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/8989b5a7-e0ef-4877-a14b-b94e91b808ea/IGVFFI2563YLKP.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S25_L007_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI8066JSDN/",
            "accession": "IGVFFI8066JSDN",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS6_r3"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T01:04:38.562174+00:00",
            "file_format": "fastq",
            "file_size": 6053084963,
            "href": "/sequence-files/IGVFFI8066JSDN/@@download/IGVFFI8066JSDN.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/ef4ea907-8500-4232-91c5-b0a78deadf14/IGVFFI8066JSDN.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S25_L007_R3_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI1502ATIW/",
            "accession": "IGVFFI1502ATIW",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS7_r1"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T01:05:37.454680+00:00",
            "file_format": "fastq",
            "file_size": 6068391140,
            "href": "/sequence-files/IGVFFI1502ATIW/@@download/IGVFFI1502ATIW.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/7870dc86-bf31-4c07-9561-df7a724e76fe/IGVFFI1502ATIW.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S25_L008_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI5167GKMK/",
            "accession": "IGVFFI5167GKMK",
            "aliases": [
                "ansuman-satpathy:igvf_exp12_atac_10x6_NGS7_r2"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2024-07-24T01:06:19.343185+00:00",
            "file_format": "fastq",
            "file_size": 3320265249,
            "href": "/sequence-files/IGVFFI5167GKMK/@@download/IGVFFI5167GKMK.fastq.gz",
            "s3_uri": "s3://igvf-restricted-files/2024/07/24/c5a9d7fd-4a0a-4f09-9e84-7ef0a2230389/IGVFFI5167GKMK.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022840/",
                "status": "released",
                "term_name": "Illumina NovaSeq X"
            },
            "status": "released",
            "submitted_file_name": "/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC6_S25_L008_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI5171OICI/",
            "accession": "IGVFFI5171OICI",
            "aliases": [
                "ansuman-satpathy:seqspec_igvf_exp12_atac_10x6_NGS1"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-09-18T02:26:20.999304+00:00",
            "file_format": "yaml",
            "file_size": 1376,
            "href": "/configuration-files/IGVFFI5171OICI/@@download/IGVFFI5171OICI.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/09/18/807c4bbe-ad3f-48df-9c8b-dd48d0d8f218/IGVFFI5171OICI.yaml.gz",
            "status": "released",
            "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x6_NGS1_atac_seqspec.yaml.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI1010XQAL/",
            "accession": "IGVFFI1010XQAL",
            "aliases": [
                "ansuman-satpathy:seqspec_igvf_exp12_atac_10x6_NGS6"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-09-18T02:26:41.027478+00:00",
            "file_format": "yaml",
            "file_size": 1373,
            "href": "/configuration-files/IGVFFI1010XQAL/@@download/IGVFFI1010XQAL.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/09/18/7c7ee860-b8cd-429e-90a7-fe4633263bf0/IGVFFI1010XQAL.yaml.gz",
            "status": "released",
            "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x6_NGS6_atac_seqspec.yaml.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI9442CSXK/",
            "accession": "IGVFFI9442CSXK",
            "aliases": [
                "ansuman-satpathy:seqspec_igvf_exp12_atac_10x6_NGS3"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-09-18T02:26:28.229492+00:00",
            "file_format": "yaml",
            "file_size": 1374,
            "href": "/configuration-files/IGVFFI9442CSXK/@@download/IGVFFI9442CSXK.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/09/18/c499a173-93ec-4b66-9f7a-806d8e9300b6/IGVFFI9442CSXK.yaml.gz",
            "status": "released",
            "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x6_NGS3_atac_seqspec.yaml.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI1130KOFA/",
            "accession": "IGVFFI1130KOFA",
            "aliases": [
                "ansuman-satpathy:seqspec_igvf_exp12_atac_10x6_NGS4"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-09-18T02:26:33.013975+00:00",
            "file_format": "yaml",
            "file_size": 1373,
            "href": "/configuration-files/IGVFFI1130KOFA/@@download/IGVFFI1130KOFA.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/09/18/89bec533-d845-46a0-9d4e-a586dfa42426/IGVFFI1130KOFA.yaml.gz",
            "status": "released",
            "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x6_NGS4_atac_seqspec.yaml.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI3255RPKM/",
            "accession": "IGVFFI3255RPKM",
            "aliases": [
                "ansuman-satpathy:seqspec_igvf_exp12_atac_10x6_NGS2"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-09-18T02:26:24.648550+00:00",
            "file_format": "yaml",
            "file_size": 1377,
            "href": "/configuration-files/IGVFFI3255RPKM/@@download/IGVFFI3255RPKM.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/09/18/e13a238a-fb1f-464a-9c84-623c5c7f249f/IGVFFI3255RPKM.yaml.gz",
            "status": "released",
            "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x6_NGS2_atac_seqspec.yaml.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI5895EBAW/",
            "accession": "IGVFFI5895EBAW",
            "aliases": [
                "ansuman-satpathy:seqspec_igvf_exp12_atac_10x6_NGS5"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-09-18T02:26:37.442893+00:00",
            "file_format": "yaml",
            "file_size": 1375,
            "href": "/configuration-files/IGVFFI5895EBAW/@@download/IGVFFI5895EBAW.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/09/18/4fb362ca-b129-4ea7-aea5-f741fb2e8bdb/IGVFFI5895EBAW.yaml.gz",
            "status": "released",
            "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x6_NGS5_atac_seqspec.yaml.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI8172QTCF/",
            "accession": "IGVFFI8172QTCF",
            "aliases": [
                "ansuman-satpathy:seqspec_igvf_exp12_atac_10x6_NGS7"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2024-09-18T02:26:44.471075+00:00",
            "file_format": "yaml",
            "file_size": 1374,
            "href": "/configuration-files/IGVFFI8172QTCF/@@download/IGVFFI8172QTCF.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/09/18/4d06a3ea-5d1b-4fcc-bef6-73404a5969be/IGVFFI8172QTCF.yaml.gz",
            "status": "released",
            "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x6_NGS7_atac_seqspec.yaml.gz",
            "upload_status": "validated"
        }
    ],
    "input_for": [
        "/analysis-sets/IGVFDS6443DIXD/"
    ],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "multiome_size": 2,
    "onlist_files": [
        "/tabular-files/IGVFFI7587TJLC/"
    ],
    "onlist_method": "no combination",
    "preferred_assay_title": "10x multiome with MULTI-seq",
    "protocols": [
        "https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
    ],
    "related_multiome_datasets": [
        {
            "@id": "/measurement-sets/IGVFDS1581RZTR/",
            "accession": "IGVFDS1581RZTR",
            "status": "released"
        }
    ],
    "release_timestamp": "2025-03-22T00:39:34.157722+00:00",
    "samples": [
        {
            "@id": "/multiplexed-samples/IGVFSM5574TAPU/",
            "@type": [
                "MultiplexedSample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM5574TAPU",
            "aliases": [
                "ansuman-satpathy:multiplexed_sample_igvf12_10x6"
            ],
            "classifications": [
                "differentiated cell specimen",
                "tissue",
                "multiplexed sample"
            ],
            "disease_terms": [],
            "institutional_certificates": [
                {
                    "@id": "/institutional-certificates/1e03eda3-a983-4cee-864e-43acb4c1b186/",
                    "certificate_identifier": "IP115-18",
                    "controlled_access": true,
                    "data_use_limitation": "GRU",
                    "status": "released"
                },
                {
                    "@id": "/institutional-certificates/460c2060-3b32-43c1-ab4b-b2ef0fbeb2b2/",
                    "certificate_identifier": "IP115-22",
                    "controlled_access": true,
                    "data_use_limitation": "GRU",
                    "status": "released"
                }
            ],
            "modifications": [],
            "sample_terms": [
                {
                    "@id": "/sample-terms/CL_0000236/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "released",
                    "summary": "B cell",
                    "term_name": "B cell"
                },
                {
                    "@id": "/sample-terms/UBERON_0002371/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "released",
                    "summary": "bone marrow",
                    "term_name": "bone marrow"
                }
            ],
            "status": "released",
            "summary": "multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples",
            "taxa": "Homo sapiens",
            "treatments": []
        }
    ],
    "schema_version": "26",
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_files_timestamp": "2024-07-24T00:12:06.270155+00:00",
    "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)",
    "uuid": "2cebf143-9241-41e2-b0cc-01d0e5ca1338"
}