{
"@context": "/terms/",
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"MeasurementSet",
"FileSet",
"Item"
],
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],
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},
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{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS7135ULJC](/measurement-sets/IGVFDS7135ULJC/) has sequence file(s) [IGVFFI7624ITNU](/sequence-files/IGVFFI7624ITNU/), [IGVFFI1923YHHK](/sequence-files/IGVFFI1923YHHK/), [IGVFFI8450TDKJ](/sequence-files/IGVFFI8450TDKJ/), [IGVFFI4471BAWM](/sequence-files/IGVFFI4471BAWM/), [IGVFFI7281TZZG](/sequence-files/IGVFFI7281TZZG/), [IGVFFI2893MYCT](/sequence-files/IGVFFI2893MYCT/), [IGVFFI4178KSHJ](/sequence-files/IGVFFI4178KSHJ/), [IGVFFI8305FKDJ](/sequence-files/IGVFFI8305FKDJ/), [IGVFFI5311ZUSI](/sequence-files/IGVFFI5311ZUSI/), [IGVFFI6429AOLS](/sequence-files/IGVFFI6429AOLS/), [IGVFFI7941GPIL](/sequence-files/IGVFFI7941GPIL/), [IGVFFI2780VBGU](/sequence-files/IGVFFI2780VBGU/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
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"path": "/measurement-sets/IGVFDS7135ULJC/"
},
{
"category": "missing sequencing kit",
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"name": "audit_inconsistent_sequencing_kit",
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}
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"https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1"
],
"release_timestamp": "2024-07-10T19:53:28.769965+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM0767GJUV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0767GJUV",
"aliases": [
"jesse-engreitz:in-vitro-system_CRUDO_TAPseq-Auxin0hrs-Rep2"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS9869EMNE/",
"accession": "IGVFDS9869EMNE",
"file_set_type": "guide library",
"status": "released",
"summary": "guide (sgRNA) library targeting accessible genome regions in 29 genomic loci"
}
],
"modifications": [
{
"@id": "/crispr-modifications/8543fa06-1720-4e7d-8e8f-7e24c1b1cf79/",
"modality": "interference",
"status": "released"
},
{
"@id": "/degron-modifications/2e8d10cc-fc98-44d5-a7d9-e2892e16c98a/",
"modality": "degradation",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:HCT116"
],
"status": "released",
"summary": "HCT116",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/3bd6f74c-8cf3-4c35-a94d-0c7c11654815/",
"title": "Chongyon Park"
},
"submitted_files_timestamp": "2024-06-03T19:11:36.315221+00:00",
"summary": "mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci",
"uuid": "26e12241-ab13-4312-9d9c-aa8782baff35"
}