{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7133CHRI",
"aliases": [
"bradley-bernstein:scRNA Lib 16",
"buenrostro-bernstein:scRNA Lib 16"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM3750ZIQU](/primary-cells/IGVFSM3750ZIQU/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM3750ZIQU/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS7133CHRI](/measurement-sets/IGVFDS7133CHRI/) has sequence file(s): [IGVFFI4879JMHF](/sequence-files/IGVFFI4879JMHF/), [IGVFFI9280CIFU](/sequence-files/IGVFFI9280CIFU/), [IGVFFI7393JHMV](/sequence-files/IGVFFI7393JHMV/), [IGVFFI2076YPJG](/sequence-files/IGVFFI2076YPJG/), [IGVFFI8635CFUT](/sequence-files/IGVFFI8635CFUT/), [IGVFFI4828OGNZ](/sequence-files/IGVFFI4828OGNZ/), [IGVFFI9817CSVJ](/sequence-files/IGVFFI9817CSVJ/), [IGVFFI3630YUXQ](/sequence-files/IGVFFI3630YUXQ/), [IGVFFI2441LWIE](/sequence-files/IGVFFI2441LWIE/), [IGVFFI1041QZVO](/sequence-files/IGVFFI1041QZVO/), [IGVFFI7004SQEI](/sequence-files/IGVFFI7004SQEI/), [IGVFFI2258KWQC](/sequence-files/IGVFFI2258KWQC/), [IGVFFI2518UJXC](/sequence-files/IGVFFI2518UJXC/), [IGVFFI5950NOVR](/sequence-files/IGVFFI5950NOVR/), [IGVFFI6761IIIZ](/sequence-files/IGVFFI6761IIIZ/), [IGVFFI6317HTKZ](/sequence-files/IGVFFI6317HTKZ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS7133CHRI/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS7133CHRI](/measurement-sets/IGVFDS7133CHRI/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS7133CHRI/"
}
]
},
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3750ZIQU",
"aliases": [
"bradley-bernstein:BioSam 4566_SS-PKR 3",
"buenrostro-bernstein:BioSam 4566_SS-PKR 3"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 3), male, Homo sapiens (49 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:35:54.988206+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "c1813f49-0349-4f87-b6e8-e469c41e198e"
}