{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS7129TVLQ/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7129TVLQ",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf16_10x1"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released auxiliary set [IGVFDS2071POUF](/auxiliary-sets/IGVFDS2071POUF/) has in progress subobject tabular file [IGVFFI2383CFVI](/tabular-files/IGVFFI2383CFVI/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/auxiliary-sets/IGVFDS2071POUF/"
},
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM3549KFGD](/multiplexed-samples/IGVFSM3549KFGD/) has in progress subobject tabular file [IGVFFI2383CFVI](/tabular-files/IGVFFI2383CFVI/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM3549KFGD/"
}
]
},
"auxiliary_sets": [
{
"@id": "/auxiliary-sets/IGVFDS2071POUF/",
"accession": "IGVFDS2071POUF",
"aliases": [
"ansuman-satpathy:multiseq_igvf16_10x1"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"status": "released"
}
],
"award": {
"@id": "/awards/HG012076/",
"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:18:24.469134+00:00",
"data_use_limitation_summaries": [
"GRU"
],
"donors": [
{
"@id": "/human-donors/IGVFDO2817PSCX/",
"accession": "IGVFDO2817PSCX",
"aliases": [
"ansuman-satpathy:donor_of_A009",
"igvf:donor_A009"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2965ZTUG/",
"accession": "IGVFDO2965ZTUG",
"aliases": [
"ansuman-satpathy:donor_of_GM01680",
"igvf:donor_GM01680"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6169GISQ/",
"accession": "IGVFDO6169GISQ",
"aliases": [
"ansuman-satpathy:donor_of_B009",
"igvf:donor_B009"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0720ONIQ/",
"accession": "IGVFDO0720ONIQ",
"aliases": [
"ansuman-satpathy:donor_of_C004",
"igvf:donor_C004"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4876ENMD/",
"accession": "IGVFDO4876ENMD",
"aliases": [
"ansuman-satpathy:donor_of_C007",
"igvf:donor_C007"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4532PFAJ/",
"accession": "IGVFDO4532PFAJ",
"aliases": [
"ansuman-satpathy:donor_of_A010",
"igvf:donor_A010"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0324ZSAY/",
"accession": "IGVFDO0324ZSAY",
"aliases": [
"ansuman-satpathy:donor_of_PENN020i-588-6",
"igvf:donor_PENN0201-588-6"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8129FWUV/",
"accession": "IGVFDO8129FWUV",
"aliases": [
"ansuman-satpathy:donor_of_B011",
"igvf:donor_B011"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1038DAII/",
"accession": "IGVFDO1038DAII",
"aliases": [
"ansuman-satpathy:donor_of_Hues6",
"igvf:donor_Hues6"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4001VEAC/",
"accession": "IGVFDO4001VEAC",
"aliases": [
"ansuman-satpathy:donor_of_XM001",
"igvf:donor_XM001"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8315PGTI/",
"accession": "IGVFDO8315PGTI",
"aliases": [
"igvf:donor_HUES8"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7670TOWV/",
"accession": "IGVFDO7670TOWV",
"aliases": [
"ansuman-satpathy:donor_of_B012",
"igvf:donor_B012"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0183MFIP/",
"accession": "IGVFDO0183MFIP",
"aliases": [
"ansuman-satpathy:donor_of_KOLF2.2J",
"igvf:donor_KOLF2.2J"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7813GMND/",
"accession": "IGVFDO7813GMND",
"aliases": [
"ansuman-satpathy:donor_of_A001",
"igvf:donor_A001"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7725MEWB/",
"accession": "IGVFDO7725MEWB",
"aliases": [
"ansuman-satpathy:donor_of_GM00731",
"igvf:donor_GM00731"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9716HDYX/",
"accession": "IGVFDO9716HDYX",
"aliases": [
"ansuman-satpathy:donor_of_A002",
"igvf:donor_A002"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7140TLQJ/",
"accession": "IGVFDO7140TLQJ",
"aliases": [
"ansuman-satpathy:donor_of_Hues9",
"igvf:donor_Hues9"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7650ICPB/",
"accession": "IGVFDO7650ICPB",
"aliases": [
"ansuman-satpathy:donor_of_B001",
"igvf:donor_B001"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1221XJAX/",
"accession": "IGVFDO1221XJAX",
"aliases": [
"ansuman-satpathy:donor_of_WA13",
"igvf:donor_WA13"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2492CCQG/",
"accession": "IGVFDO2492CCQG",
"aliases": [
"ansuman-satpathy:donor_of_B004",
"igvf:donor_B004"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9904ZSML/",
"accession": "IGVFDO9904ZSML",
"aliases": [
"ansuman-satpathy:donor_of_RUES1",
"igvf:donor_RUES1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4452ZQSF/",
"accession": "IGVFDO4452ZQSF",
"aliases": [
"ansuman-satpathy:donor_of_B010",
"igvf:donor_B010"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8129UUAA/",
"accession": "IGVFDO8129UUAA",
"aliases": [
"ansuman-satpathy:donor_of_C008",
"igvf:donor_C008"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8977PNMK/",
"accession": "IGVFDO8977PNMK",
"aliases": [
"ansuman-satpathy:donor_of_C001",
"igvf:donor_C001"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3755LIBB/",
"accession": "IGVFDO3755LIBB",
"aliases": [
"ansuman-satpathy:donor_of_A006",
"igvf:donor_A006"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7470LCGC/",
"accession": "IGVFDO7470LCGC",
"aliases": [
"ansuman-satpathy:donor_of_WA25",
"igvf:donor_WA25"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9617JBWJ/",
"accession": "IGVFDO9617JBWJ",
"aliases": [
"ansuman-satpathy:donor_of_B002",
"igvf:donor_B002"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0657EMJH/",
"accession": "IGVFDO0657EMJH",
"aliases": [
"ansuman-satpathy:donor_of_GM01652",
"igvf:donor_GM01652"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2650AGWB/",
"accession": "IGVFDO2650AGWB",
"aliases": [
"ansuman-satpathy:donor_of_WA14",
"igvf:donor_WA14"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1364EAZP/",
"accession": "IGVFDO1364EAZP",
"aliases": [
"ansuman-satpathy:donor_of_PENN086i-278-1",
"igvf:donor_PENN086i-278-1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2750DZPB/",
"accession": "IGVFDO2750DZPB",
"aliases": [
"ansuman-satpathy:donor_of_B007",
"igvf:donor_B007"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8893DMFF/",
"accession": "IGVFDO8893DMFF",
"aliases": [
"ansuman-satpathy:donor_of_B006",
"igvf:donor_B006"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6162MIWK/",
"accession": "IGVFDO6162MIWK",
"aliases": [
"ansuman-satpathy:donor_of_WA26",
"igvf:donor_WA26"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5261UCLF/",
"accession": "IGVFDO5261UCLF",
"aliases": [
"igvf:donor_of_RUES2",
"igvf:donor_RUES2"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2620HPCX/",
"accession": "IGVFDO2620HPCX",
"aliases": [
"ansuman-satpathy:donor_of_B003",
"igvf:donor_B003"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5656YCPC/",
"accession": "IGVFDO5656YCPC",
"aliases": [
"ansuman-satpathy:donor_of_Mel-1",
"igvf:donor_Mel-1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6441FSJH/",
"accession": "IGVFDO6441FSJH",
"aliases": [
"ansuman-satpathy:donor_of_A003",
"igvf:donor_A003"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1964RNHE/",
"accession": "IGVFDO1964RNHE",
"aliases": [
"ansuman-satpathy:donor_of_C003",
"igvf:donor_C003"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2379DTAU/",
"accession": "IGVFDO2379DTAU",
"aliases": [
"ansuman-satpathy:donor_of_A007",
"igvf:donor_A007"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6638HIAD/",
"accession": "IGVFDO6638HIAD",
"aliases": [
"igvf:donor_of_H1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2718IDDQ/",
"accession": "IGVFDO2718IDDQ",
"aliases": [
"igvf:donor_of_H9"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4134ZWBU/",
"accession": "IGVFDO4134ZWBU",
"aliases": [
"ansuman-satpathy:donor_of_B005",
"igvf:donor_B005"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5614PTYQ/",
"accession": "IGVFDO5614PTYQ",
"aliases": [
"ansuman-satpathy:donor_of_A004",
"igvf:donor_A004"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5729MXSO/",
"accession": "IGVFDO5729MXSO",
"aliases": [
"ansuman-satpathy:donor_of_B008",
"igvf:donor_B008"
],
"sex": "female",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI0713ZOGQ/",
"accession": "IGVFFI0713ZOGQ",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS2_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:22:41.204329+00:00",
"file_format": "fastq",
"file_size": 6058074539,
"href": "/sequence-files/IGVFFI0713ZOGQ/@@download/IGVFFI0713ZOGQ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/489846b6-e8a4-4428-b44b-43671ca69ef1/IGVFFI0713ZOGQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L004_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9928RSAK/",
"accession": "IGVFFI9928RSAK",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS3_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:25:01.115875+00:00",
"file_format": "fastq",
"file_size": 1587063382,
"href": "/sequence-files/IGVFFI9928RSAK/@@download/IGVFFI9928RSAK.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/7c89fb66-ab55-464e-ad56-f355892c62dc/IGVFFI9928RSAK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L005_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0453UUOZ/",
"accession": "IGVFFI0453UUOZ",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS4_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:27:51.537333+00:00",
"file_format": "fastq",
"file_size": 1588247097,
"href": "/sequence-files/IGVFFI0453UUOZ/@@download/IGVFFI0453UUOZ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/201a2be7-4c64-48a5-b2ec-b91a7f604aca/IGVFFI0453UUOZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L006_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0400ULYL/",
"accession": "IGVFFI0400ULYL",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS1_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:20:51.497790+00:00",
"file_format": "fastq",
"file_size": 13201834927,
"href": "/sequence-files/IGVFFI0400ULYL/@@download/IGVFFI0400ULYL.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/adcff376-925f-4d18-b785-baaa576af369/IGVFFI0400ULYL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L003_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8333ROXA/",
"accession": "IGVFFI8333ROXA",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS3_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:24:43.371336+00:00",
"file_format": "fastq",
"file_size": 1559384225,
"href": "/sequence-files/IGVFFI8333ROXA/@@download/IGVFFI8333ROXA.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/3f925f92-3329-4e79-9919-922dc8d416bf/IGVFFI8333ROXA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L005_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3881XDOK/",
"accession": "IGVFFI3881XDOK",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS3_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:26:24.850451+00:00",
"file_format": "fastq",
"file_size": 13624395243,
"href": "/sequence-files/IGVFFI3881XDOK/@@download/IGVFFI3881XDOK.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/53d18d2b-a0ad-4ca5-95be-79d166370c20/IGVFFI3881XDOK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L005_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6702JQWM/",
"accession": "IGVFFI6702JQWM",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS1_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:19:31.050613+00:00",
"file_format": "fastq",
"file_size": 1561804660,
"href": "/sequence-files/IGVFFI6702JQWM/@@download/IGVFFI6702JQWM.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/b7e27a3c-be70-4d15-8d86-54962c2c34f8/IGVFFI6702JQWM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L003_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3692AZMH/",
"accession": "IGVFFI3692AZMH",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS1_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:19:55.110766+00:00",
"file_format": "fastq",
"file_size": 6053792041,
"href": "/sequence-files/IGVFFI3692AZMH/@@download/IGVFFI3692AZMH.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/510ee78b-a0c8-47b7-a5e1-08db08fc9380/IGVFFI3692AZMH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L003_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9327MLZQ/",
"accession": "IGVFFI9327MLZQ",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS2_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:23:35.414540+00:00",
"file_format": "fastq",
"file_size": 13292663958,
"href": "/sequence-files/IGVFFI9327MLZQ/@@download/IGVFFI9327MLZQ.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/c6cd6fe3-66dd-4ef0-9818-58d35190fbc5/IGVFFI9327MLZQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L004_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7952OPCT/",
"accession": "IGVFFI7952OPCT",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS4_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:27:33.919024+00:00",
"file_format": "fastq",
"file_size": 1561741565,
"href": "/sequence-files/IGVFFI7952OPCT/@@download/IGVFFI7952OPCT.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/49890f16-2881-44d5-8f37-34c9673ec37a/IGVFFI7952OPCT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L006_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5115RNMK/",
"accession": "IGVFFI5115RNMK",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS4_r2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:29:15.532219+00:00",
"file_format": "fastq",
"file_size": 13600567222,
"href": "/sequence-files/IGVFFI5115RNMK/@@download/IGVFFI5115RNMK.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/a80dc43b-0254-4b4d-87b6-9862a619108b/IGVFFI5115RNMK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L006_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3403KDKD/",
"accession": "IGVFFI3403KDKD",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS3_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:25:26.599543+00:00",
"file_format": "fastq",
"file_size": 6199387544,
"href": "/sequence-files/IGVFFI3403KDKD/@@download/IGVFFI3403KDKD.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/0381b09a-86b6-43cb-8ff7-3d2108c0d472/IGVFFI3403KDKD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L005_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0775AWUK/",
"accession": "IGVFFI0775AWUK",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS4_r1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:28:16.594143+00:00",
"file_format": "fastq",
"file_size": 6214057320,
"href": "/sequence-files/IGVFFI0775AWUK/@@download/IGVFFI0775AWUK.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/9835befe-6c3f-494e-bacc-6f814f513abc/IGVFFI0775AWUK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L006_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6929MVWD/",
"accession": "IGVFFI6929MVWD",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS1_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:19:14.498691+00:00",
"file_format": "fastq",
"file_size": 1551239731,
"href": "/sequence-files/IGVFFI6929MVWD/@@download/IGVFFI6929MVWD.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/b2ef540d-325a-42bb-bfff-0e756ca4f9cd/IGVFFI6929MVWD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L003_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2387PYDS/",
"accession": "IGVFFI2387PYDS",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS2_i1"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:21:58.268206+00:00",
"file_format": "fastq",
"file_size": 1525103336,
"href": "/sequence-files/IGVFFI2387PYDS/@@download/IGVFFI2387PYDS.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/1a02c97c-3a5a-4f94-bd1c-272fc1f67421/IGVFFI2387PYDS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L004_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0928TPLK/",
"accession": "IGVFFI0928TPLK",
"aliases": [
"ansuman-satpathy:igvf_exp16_rna_10x1_NGS2_i2"
],
"content_type": "reads",
"controlled_access": true,
"creation_timestamp": "2025-02-03T21:22:16.406676+00:00",
"file_format": "fastq",
"file_size": 1547199991,
"href": "/sequence-files/IGVFFI0928TPLK/@@download/IGVFFI0928TPLK.fastq.gz",
"s3_uri": "s3://igvf-restricted-files/2025/02/03/37819d43-bdf9-43c4-9316-93ecc40d856b/IGVFFI0928TPLK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "released",
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/GEX/CMAS18_GEX1_S7_L004_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6252ALMZ/",
"accession": "IGVFFI6252ALMZ",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp16_rna_10x1_NGS3"
],
"content_type": "seqspec",
"creation_timestamp": "2025-02-26T01:33:49.836086+00:00",
"file_format": "yaml",
"file_size": 1394,
"href": "/configuration-files/IGVFFI6252ALMZ/@@download/IGVFFI6252ALMZ.yaml.gz",
"s3_uri": "s3://igvf-files/2025/02/26/87348b56-60ac-4223-aca5-1e03aa0bd7f9/IGVFFI6252ALMZ.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp16_rna_10x1_NGS3_rna_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6574IKSE/",
"accession": "IGVFFI6574IKSE",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp16_rna_10x1_NGS2"
],
"content_type": "seqspec",
"creation_timestamp": "2025-02-26T01:33:44.727946+00:00",
"file_format": "yaml",
"file_size": 1397,
"href": "/configuration-files/IGVFFI6574IKSE/@@download/IGVFFI6574IKSE.yaml.gz",
"s3_uri": "s3://igvf-files/2025/02/26/61353baa-d756-4837-8f3f-09e9629f6daf/IGVFFI6574IKSE.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp16_rna_10x1_NGS2_rna_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI8216GWJU/",
"accession": "IGVFFI8216GWJU",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp16_rna_10x1_NGS4"
],
"content_type": "seqspec",
"creation_timestamp": "2025-02-26T01:33:55.437507+00:00",
"file_format": "yaml",
"file_size": 1395,
"href": "/configuration-files/IGVFFI8216GWJU/@@download/IGVFFI8216GWJU.yaml.gz",
"s3_uri": "s3://igvf-files/2025/02/26/d2334786-9ee8-476d-bd44-88195dfe6b82/IGVFFI8216GWJU.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp16_rna_10x1_NGS4_rna_seqspec.yaml.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI1111TBNJ/",
"accession": "IGVFFI1111TBNJ",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp16_rna_10x1_NGS1"
],
"content_type": "seqspec",
"creation_timestamp": "2025-02-26T01:33:39.353454+00:00",
"file_format": "yaml",
"file_size": 1396,
"href": "/configuration-files/IGVFFI1111TBNJ/@@download/IGVFFI1111TBNJ.yaml.gz",
"s3_uri": "s3://igvf-files/2025/02/26/79b83535-af06-4aef-81d4-d52a62652320/IGVFFI1111TBNJ.yaml.gz",
"status": "released",
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp16_rna_10x1_NGS1_rna_seqspec.yaml.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS7388FOPN/"
],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"multiome_size": 2,
"onlist_files": [
"/tabular-files/IGVFFI8751YQRY/"
],
"onlist_method": "no combination",
"preferred_assay_title": "10x multiome with MULTI-seq",
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS4158FYXM/",
"accession": "IGVFDS4158FYXM",
"status": "released"
}
],
"release_timestamp": "2025-03-22T00:40:52.900550+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM3549KFGD/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM3549KFGD",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf16_10x1"
],
"cellular_sub_pool": "1",
"classifications": [
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [
{
"@id": "/institutional-certificates/1926d993-629d-42d9-a962-f391ea6ee18f/",
"certificate_identifier": "IP115-23",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "in progress"
}
],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004905/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "induced pluripotent stem cell",
"term_name": "induced pluripotent stem cell"
}
],
"status": "released",
"summary": "multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_files_timestamp": "2025-02-03T21:19:14.498691+00:00",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)",
"uuid": "85fe4bd7-9f9f-47d2-b753-db97b98a2489"
}