IGVFDS7067AOZJ

released

GRU

File Set Type

experimental data

Summary

single-cell ATAC-seq (SHARE-seq)

Assay Term

single-cell ATAC-seq

Sample Summaries

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 10 days (cellular sub pool: SS-PKR 207)

Protocols

https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw

Aliases

buenrostro-bernstein:scATAC Lib 598

Attribution

Jason Buenrostro, Broad

(

HG011986 — Jason Buenrostro

)

Sequencing Results (Illumina)

36 items

Read Names

IGVFFI0008SQLO

fastq

reads

8612

IGVFFI8568GKLQ

Illumina NovaSeq X

22LMVNLT4

984 MB

Jason Buenrostro, Broad

validated

IGVFFI0433DBJF

fastq

reads

4384

IGVFFI4406PPRV

Illumina NovaSeq 6000

H75F7DSX5

1.2 GB

Jason Buenrostro, Broad

validated

IGVFFI0937WRPH

fastq

reads

9092

Barcode index

IGVFFI3148QDIB

Illumina NovaSeq X

22LMVNLT4

572 MB

Jason Buenrostro, Broad

validated

IGVFFI1094EBJM

fastq

reads

3879

Barcode index

IGVFFI3168OXVX

Illumina NovaSeq X

22523KLT3

408 MB

Jason Buenrostro, Broad

validated

IGVFFI1203MFLP

fastq

reads

8900

IGVFFI5266VHOS

Illumina NovaSeq X

22LMVNLT4

997 MB

Jason Buenrostro, Broad

validated

IGVFFI1382TJZG

fastq

reads

8996

IGVFFI5370XIWS

Illumina NovaSeq X

22LMVNLT4

900 MB

Jason Buenrostro, Broad

validated

IGVFFI1794DPOY

fastq

reads

8612

Barcode index

IGVFFI8568GKLQ

Illumina NovaSeq X

22LMVNLT4

576 MB

Jason Buenrostro, Broad

validated

IGVFFI2542NUOH

fastq

reads

8708

Barcode index

IGVFFI4097HKDA

Illumina NovaSeq X

22LMVNLT4

585 MB

Jason Buenrostro, Broad

validated

IGVFFI2966BLLS

fastq

reads

3915

IGVFFI2938YVFN

Illumina NovaSeq X

22523KLT3

985 MB

Jason Buenrostro, Broad

validated

IGVFFI2978XIXL

fastq

reads

8516

IGVFFI1411EJSH

Illumina NovaSeq X

22LMVNLT4

1.0 GB

Jason Buenrostro, Broad

validated

Samples

1 item

Accession

Type

Sample Terms

Associated Construct Library Sets

Summary

IGVFSM3740EDPI

InVitroSystem

induced pluripotent stem cell

Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 10 days (cellular sub pool: SS-PKR 207)