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IGVFDS7064HWUF

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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples
Protocols
Aliases
igvf:corces_measurementSet_X043_G7_RNA

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
I1
1
222YMLLT3
6
423 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
222YMLLT3
6
380 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
222YMLLT3
7
360 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
222YMLLT3
8
402 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
222YMLLT3
8
360 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
222YMLLT3
7
2.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
222YMLLT3
8
2.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
222YMLLT3
5
425 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
222YMLLT3
5
381 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
222YMLLT3
6
2.8 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples

Donors

12 items
Aliases
  • igvf:corces_donor_BANN1344
female
Homo sapiens
  • igvf:corces_donor_BANN0560
male
Homo sapiens
  • igvf:corces_donor_BANN0002
male
Homo sapiens
  • igvf:corces_donor_BANN1959
male
Homo sapiens
  • igvf:corces_donor_BANN1957
male
Homo sapiens
  • igvf:corces_donor_BANN1329
male
Homo sapiens
  • igvf:corces_donor_BANN1201
male
Homo sapiens
  • igvf:corces_donor_BANN1089
female
Homo sapiens
  • igvf:corces_donor_BANN1812
female
Homo sapiens
  • igvf:corces_donor_BANN0315
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_X043_G7_ATAC
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF