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IGVFDS7058NUBI

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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Protocols
Aliases
igvf:corces_measurementSet_X044_G4_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R2
1
Read 2
222YMLLT3
7
2.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
222YMLLT3
8
440 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
222YMLLT3
7
444 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
222YMLLT3
8
2.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
222YMLLT3
8
412 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
222YMLLT3
7
1.3 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
222YMLLT3
6
459 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
222YMLLT3
6
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
222YMLLT3
7
416 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
222YMLLT3
5
432 MB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples

Donors

12 items
Aliases
  • igvf:corces_donor_BANN1750
male
Homo sapiens
  • igvf:corces_donor_BANN1827
male
Homo sapiens
  • igvf:corces_donor_BANN1404
male
Homo sapiens
  • igvf:corces_donor_BANN0413
male
Homo sapiens
  • igvf:corces_donor_BANN1311
male
Homo sapiens
  • igvf:corces_donor_BANN1632
male
Homo sapiens
  • igvf:corces_donor_BANN1201
male
Homo sapiens
  • igvf:corces_donor_BANN1570
male
Homo sapiens
  • igvf:corces_donor_BANN0341
male
Homo sapiens
  • igvf:corces_donor_BANN1039
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_X044_G4_ATAC
Ryan Corces, Gladstone Institute UCSF