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INDEXED
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MeasurementSet
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IGVFDS7038EDPA
IGVFDS7038EDPA
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 199)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 548
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
30 items
1
2
3
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0125TSLT
fastq
reads
R1
4260
Read 1
IGVFFI3019FRDK
Illumina NovaSeq X
22523KLT3
2.9 GB
Jason Buenrostro, Broad
validated
IGVFFI0181MGHU
fastq
reads
R2
4260
Read 2
IGVFFI3019FRDK
Illumina NovaSeq X
22523KLT3
1.4 GB
Jason Buenrostro, Broad
validated
IGVFFI1014AMSM
fastq
reads
R1
4318
Read 1
IGVFFI6001YJIM
Illumina NovaSeq 6000
H75F7DSX5
6.8 GB
Jason Buenrostro, Broad
validated
IGVFFI1579PTAM
fastq
reads
R1
8790
Read 1
IGVFFI7310TIYY
Illumina NovaSeq X
22LMVNLT4
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI1851XXMD
fastq
reads
R2
8502
Read 2
IGVFFI2980KSPE
Illumina NovaSeq X
22LMVNLT4
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI3204ZASS
fastq
reads
I1
8598
Barcode index
IGVFFI4790EZUY
Illumina NovaSeq X
22LMVNLT4
631 MB
Jason Buenrostro, Broad
validated
IGVFFI4170IJUT
fastq
reads
R2
9174
Read 2
IGVFFI6163SCMT
Illumina NovaSeq X
22LMVNLT4
966 MB
Jason Buenrostro, Broad
validated
IGVFFI4189SGLE
fastq
reads
R1
8694
Read 1
IGVFFI5504UEKD
Illumina NovaSeq X
22LMVNLT4
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI4288KYIA
fastq
reads
R2
9078
Read 2
IGVFFI0191SQQF
Illumina NovaSeq X
22LMVNLT4
1.0 GB
Jason Buenrostro, Broad
validated
IGVFFI4334AMHD
fastq
reads
I1
8694
Barcode index
IGVFFI5504UEKD
Illumina NovaSeq X
22LMVNLT4
639 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM6215AZOS
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 199)
Donors
99 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0123YZDN
buenrostro-bernstein:Donor 1943
unspecified
Homo sapiens
IGVFDO0211CZWE
buenrostro-bernstein:Donor 1909
unspecified
Homo sapiens
IGVFDO0279GJBF
buenrostro-bernstein:Donor 1937
unspecified
Homo sapiens
IGVFDO0417TJMX
buenrostro-bernstein:Donor 1907
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0508COBR
buenrostro-bernstein:Donor 1963
unspecified
Homo sapiens
IGVFDO0948FTCE
buenrostro-bernstein:Donor 1952
unspecified
Homo sapiens
IGVFDO0980QZSD
buenrostro-bernstein:Donor 1946
unspecified
Homo sapiens
IGVFDO1064GZAS
buenrostro-bernstein:Donor 1982
unspecified
Homo sapiens
IGVFDO1255IJEH
buenrostro-bernstein:Donor 1975
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS2855REKB
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 375
Jason Buenrostro, Broad