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IGVFDS7037REPR

released
File Set Type
experimental data
Summary
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus
Assay Term
Hi-C assay
Sample Summaries
  • HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library
Construct Library Sets
  • IGVFDS8122GWMC guide (sgRNA) library targeting accessible genome regions in a genomic locus
Protocols
Aliases
charles-gersbach:measurement-set-crispra-region3-mouse-hl1-targeted-hicar-rep1

Sequencing Results (Illumina)

2 items
fastq
reads
R2
4
1.2 GB
Charles Gersbach, Duke
validated
fastq
reads
R1
4
1.1 GB
Charles Gersbach, Duke
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • charles-gersbach:mouse-donor-HL-1
female
Mus musculus

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
HiCAR: contact matrix
  • charles-gersbach:analysis-set-crispra-region3-mouse-hl1-targeted-hicar-rep1-cool
Charles Gersbach, Duke

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke