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IGVFDS7029XULI

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 39.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell; ... and 18 more samples
Protocols
Aliases
jimmie-ye:XX1-SC1_snATAC

Sequencing Results (Illumina)

20 items
Read Names
fastq
reads
I1
2
1.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
3
Read 2
5.4 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
3
Read 1
5.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
4
Read 2
5.4 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
1
Read 2
5.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
4
1.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
1
1.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
4
Barcode index
2.9 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
1
Read 1
5.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
5
Read 1
5.3 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 39.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 28.0 years) peripheral blood mononuclear cell; ... and 18 more samples

Donors

20 items
Aliases
  • jimmie-ye:donor_35
female
Homo sapiens
  • jimmie-ye:donor_286
male
Homo sapiens
  • jimmie-ye:donor_8
female
Homo sapiens
  • jimmie-ye:donor_4
male
Homo sapiens
  • jimmie-ye:donor_254
female
Homo sapiens
  • jimmie-ye:donor_242
male
Homo sapiens
  • jimmie-ye:donor_12
female
Homo sapiens
  • jimmie-ye:donor_6
female
Homo sapiens
  • jimmie-ye:donor_1
female
Homo sapiens
  • jimmie-ye:donor_283
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX1-SC1_snRNA
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF