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MeasurementSet
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IGVFDS7020OWZV
IGVFDS7020OWZV
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci
Assay Term
in vitro CRISPR screen using single-cell RNA-seq
Sample Summaries
TeloHAEC cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
Construct Library Sets
IGVFDS1298TUYG
guide (sgRNA) library targeting genes in many genomic loci
Protocols
https://www.protocols.io/view/systematic-perturb-seq-to-discover-endothelial-cel-261ged73yv47/v1
Aliases
jesse-engreitz:measurement_set-scRNAseq_2kG_2PMDox1_2
Sequencing Results (Illumina)
15 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1380VXFU
fastq
reads
R1
5
Illumina NovaSeq 6000
9.0 GB
Jesse Engreitz, Stanford
validated
IGVFFI1391YIJH
fastq
reads
I1
2
Illumina NovaSeq 6000
1.2 GB
Jesse Engreitz, Stanford
validated
IGVFFI2371VZXD
fastq
reads
R1
1
Illumina NovaSeq 6000
4.0 GB
Jesse Engreitz, Stanford
validated
IGVFFI2876WMEJ
fastq
reads
I1
4
Illumina NovaSeq 6000
1.0 GB
Jesse Engreitz, Stanford
validated
IGVFFI4470AEJY
fastq
reads
I1
1
Illumina NovaSeq 6000
1.1 GB
Jesse Engreitz, Stanford
validated
IGVFFI4537CRQB
fastq
reads
R2
4
Illumina NovaSeq 6000
4.6 GB
Jesse Engreitz, Stanford
validated
IGVFFI4579JVPX
fastq
reads
R1
4
Illumina NovaSeq 6000
3.3 GB
Jesse Engreitz, Stanford
validated
IGVFFI4884PQOZ
fastq
reads
R2
3
Illumina NovaSeq 6000
5.8 GB
Jesse Engreitz, Stanford
validated
IGVFFI5242WGZK
fastq
reads
I1
3
Illumina NovaSeq 6000
1.1 GB
Jesse Engreitz, Stanford
validated
IGVFFI5438XHZQ
fastq
reads
R2
2
Illumina NovaSeq 6000
5.7 GB
Jesse Engreitz, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM4878HUHM
InVitroSystem
TeloHAEC
TeloHAEC cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO3459DFTW
igvf:donor_of_teloHAEC
female
Homo sapiens
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7943IIWZ
AnalysisSet
interference Perturb-seq
jesse-engreitz:analysis_set_TeloHAEC_Perturb-seq_2kG
Jesse Engreitz, Stanford
Auxiliary Datasets
1 item
Accession
Type
Summary
Files
Aliases
Lab
IGVFDS2133BONK
AuxiliarySet
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci
IGVFFI7385SAFP
,
IGVFFI3939BDDA
,
IGVFFI6758DOYZ
,
IGVFFI0366MMUQ
jesse-engreitz:auxiliary_sets-scRNAseq_2kG_2PMDox1_2
Jesse Engreitz, Stanford
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford