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IGVFDS6995DUBD

released
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples
Protocols
Aliases
ansuman-satpathy:snATAC-seq_igvf4_10x2

Sequencing Results (Illumina)

8 items
Read Names
fastq
reads
R3
1
Read 2
222YV7LT3
3
20 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
222YV7LT3
3
20 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
222YV7LT3
4
4.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
222YV7LT3
3
11 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
I1
1
222YV7LT3
3
4.1 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R2
1
Barcode index
222YV7LT3
4
11 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R3
1
Read 2
222YV7LT3
4
20 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
R1
1
Read 1
222YV7LT3
4
19 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_WTC11
male
Homo sapiens

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf4_analysis_set_10x2
Ansuman Satpathy, Stanford

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf4_10x2
Ansuman Satpathy, Stanford

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf4_10x2
Ansuman Satpathy, Stanford

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford