IGVFDS6967XELN

released
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        "term_name": "massively parallel reporter assay"
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            "title": "Jay Shendure"
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        "title": "Massively parallel characterization of variants and elements impacting transcriptional regulation in dynamic cellular systems"
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    "creation_timestamp": "2023-12-08T23:53:49.593699+00:00",
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            "status": "released",
            "taxa": "Mus musculus"
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            "@id": "/configuration-files/IGVFFI0985UMGM/",
            "accession": "IGVFFI0985UMGM",
            "aliases": [
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            "creation_timestamp": "2024-08-22T22:51:13.753061+00:00",
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            "status": "in progress",
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            "upload_status": "validated"
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    "input_for": [
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    "lab": {
        "@id": "/labs/jay-shendure/",
        "title": "Jay Shendure, UW"
    },
    "notes": "The readout 86015c12-b9a6-43ba-9601-5d75aab4d39c was removed from this measurement set.",
    "preferred_assay_title": "MPRA (scQer)",
    "protocols": [
        "https://www.protocols.io/file/n92rb7r27.pdf"
    ],
    "publications": [
        {
            "@id": "/publications/398edd7f-1ebb-40a0-a04b-450a2565667c/",
            "publication_identifiers": [
                "doi:10.1038/s41592-024-02260-3",
                "PMID:38724692"
            ],
            "status": "released"
        }
    ],
    "release_timestamp": "2024-06-27T00:41:46.112969+00:00",
    "samples": [
        {
            "@id": "/in-vitro-systems/IGVFSM0317RLIP/",
            "@type": [
                "InVitroSystem",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM0317RLIP",
            "aliases": [
                "jay-shendure:dev_CRE_mEBs_rep2B_10Xlane1"
            ],
            "cell_fate_change_treatments": [
                {
                    "@id": "/treatments/9acc7857-c9dd-4b4a-a78b-fdf10c8ae679/",
                    "purpose": "differentiation",
                    "status": "released",
                    "summary": "Depletion of Leukemia inhibitory factor",
                    "treatment_type": "protein"
                }
            ],
            "classifications": [
                "differentiated cell specimen"
            ],
            "construct_library_sets": [
                {
                    "@id": "/construct-library-sets/IGVFDS7655GRFI/",
                    "accession": "IGVFDS7655GRFI",
                    "file_set_type": "reporter library",
                    "status": "released",
                    "summary": "reporter library targeting accessible genome regions in many genomic loci"
                }
            ],
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                {
                    "@id": "/sample-terms/EFO_0004038/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "released",
                    "summary": "mouse embryonic stem cell",
                    "term_name": "mouse embryonic stem cell"
                }
            ],
            "status": "released",
            "summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane1), male, Mus musculus WD44 transfected with a reporter library",
            "targeted_sample_term": {
                "@id": "/sample-terms/UBERON_0014374/",
                "status": "released",
                "term_name": "embryoid body"
            },
            "taxa": "Mus musculus"
        }
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    "schema_version": "23",
    "status": "released",
    "submitted_by": {
        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
        "title": "Beth Martin"
    },
    "submitted_files_timestamp": "2023-12-09T00:57:59.884030+00:00",
    "summary": "MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci",
    "uuid": "376b9ce1-8c75-4a84-a844-46ceceab9202"
}