{
"@context": "/terms/",
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"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS6965XHYL",
"aliases": [
"bradley-bernstein:scRNA Lib 36",
"buenrostro-bernstein:scRNA Lib 36"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
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"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS6965XHYL](/measurement-sets/IGVFDS6965XHYL/) has sequence file(s): [IGVFFI5748SWAZ](/sequence-files/IGVFFI5748SWAZ/), [IGVFFI6779VSNJ](/sequence-files/IGVFFI6779VSNJ/), [IGVFFI5923YLJY](/sequence-files/IGVFFI5923YLJY/), [IGVFFI6229XAQO](/sequence-files/IGVFFI6229XAQO/), [IGVFFI1290NDRG](/sequence-files/IGVFFI1290NDRG/), [IGVFFI3318HNNC](/sequence-files/IGVFFI3318HNNC/), [IGVFFI8002TUHZ](/sequence-files/IGVFFI8002TUHZ/), [IGVFFI9988IGPN](/sequence-files/IGVFFI9988IGPN/), [IGVFFI4415FSSM](/sequence-files/IGVFFI4415FSSM/), [IGVFFI4939SIFF](/sequence-files/IGVFFI4939SIFF/), [IGVFFI6822XMMN](/sequence-files/IGVFFI6822XMMN/), [IGVFFI1776TSUS](/sequence-files/IGVFFI1776TSUS/), [IGVFFI1482NCRE](/sequence-files/IGVFFI1482NCRE/), [IGVFFI4930FZOS](/sequence-files/IGVFFI4930FZOS/), [IGVFFI5360WOOY](/sequence-files/IGVFFI5360WOOY/), [IGVFFI4727YXAT](/sequence-files/IGVFFI4727YXAT/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS6965XHYL/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM4247WODL](/primary-cells/IGVFSM4247WODL/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM4247WODL/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS6965XHYL](/measurement-sets/IGVFDS6965XHYL/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
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"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS6965XHYL/"
}
]
},
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4247WODL",
"aliases": [
"bradley-bernstein:BioSam 4568_SS-PKR 6",
"buenrostro-bernstein:BioSam 4568_SS-PKR 6"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 6), male, Homo sapiens (37 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:47:26.405328+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "5b952214-b942-4763-a541-63d6ba505e3f"
}