IGVFDS6964GFPC

released
{
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        "ali-mortazavi:003_67M_illumina"
    ],
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        "@id": "/assay-terms/OBI_0003109/",
        "assay_slims": [
            "gene expression"
        ],
        "status": "released",
        "term_name": "single-nucleus RNA sequencing assay"
    },
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        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Released multiplexed sample [IGVFSM9366TSMN](/multiplexed-samples/IGVFSM9366TSMN/) has in progress subobject tabular file [IGVFFI4465NRTD](/tabular-files/IGVFFI4465NRTD/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
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            },
            {
                "category": "missing publication",
                "detail": "Multiplexed sample [IGVFSM9366TSMN](/multiplexed-samples/IGVFSM9366TSMN/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_sample_missing_publication",
                "path": "/multiplexed-samples/IGVFSM9366TSMN/"
            },
            {
                "category": "NTR term ID",
                "detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_ntr_term_id",
                "path": "/sample-terms/NTR_0000646/"
            },
            {
                "category": "NTR term ID",
                "detail": "Sample term for [NTR_0000750](/sample-terms/NTR_0000750/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_ntr_term_id",
                "path": "/sample-terms/NTR_0000750/"
            },
            {
                "category": "NTR term ID",
                "detail": "Sample term for [NTR_0000647](/sample-terms/NTR_0000647/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_ntr_term_id",
                "path": "/sample-terms/NTR_0000647/"
            },
            {
                "category": "NTR term ID",
                "detail": "Sample term for [NTR_0000751](/sample-terms/NTR_0000751/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_ntr_term_id",
                "path": "/sample-terms/NTR_0000751/"
            },
            {
                "category": "missing publication",
                "detail": "Measurement set [IGVFDS6964GFPC](/measurement-sets/IGVFDS6964GFPC/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_file_set_missing_publication",
                "path": "/measurement-sets/IGVFDS6964GFPC/"
            },
            {
                "category": "mismatched status",
                "detail": "Released measurement set [IGVFDS6964GFPC](/measurement-sets/IGVFDS6964GFPC/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/measurement-sets/IGVFDS6964GFPC/"
            },
            {
                "category": "mismatched status",
                "detail": "Released measurement set [IGVFDS6964GFPC](/measurement-sets/IGVFDS6964GFPC/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/measurement-sets/IGVFDS6964GFPC/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping",
        "contact_pi": {
            "@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
            "title": "Ali Mortazavi"
        },
        "title": "Center for Mouse Genomic Variation at Single Cell Resolution"
    },
    "control_for": [],
    "creation_timestamp": "2023-10-05T00:01:14.356409+00:00",
    "data_use_limitation_summaries": [
        "no certificate"
    ],
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            "upload_status": "validated"
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            "@id": "/configuration-files/IGVFFI1285IVNV/",
            "accession": "IGVFFI1285IVNV",
            "content_type": "seqspec",
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    "input_for": [
        "/analysis-sets/IGVFDS5395YECK/"
    ],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
    "onlist_files": [
        "/tabular-files/IGVFFI2591OFQO/",
        "/tabular-files/IGVFFI1138MCVX/"
    ],
    "onlist_method": "multi",
    "preferred_assay_title": "Parse SPLiT-seq",
    "protocols": [
        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-eq2lyj17rlx9/v1",
        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-dm6gp3zedvzp/v2",
        "https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
        "https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
    ],
    "release_timestamp": "2025-04-18T22:22:47.150158+00:00",
    "samples": [
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            "@type": [
                "MultiplexedSample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM9366TSMN",
            "aliases": [
                "ali-mortazavi:subpool_003_67M"
            ],
            "cellular_sub_pool": "003_67M",
            "classifications": [
                "tissue",
                "multiplexed sample"
            ],
            "disease_terms": [],
            "institutional_certificates": [],
            "modifications": [],
            "sample_terms": [
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            ],
            "status": "released",
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            "taxa": "Mus musculus",
            "treatments": []
        }
    ],
    "schema_version": "26",
    "sequencing_library_types": [
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    "strand_specificity": "5 prime to 3 prime",
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    "summary": "Parse SPLiT-seq",
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}