{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS6953SXZW/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS6953SXZW",
"aliases": [
"jesse-engreitz:Jurkat_Stim-IL2RA_prom-BioRep2-FFRep1-BinD_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview in vitro system [IGVFSM2690PEZO](/in-vitro-systems/IGVFSM2690PEZO/) has in progress subobject treatment [cf87f410-54ee-48ef-b654-8443c4fee032](/treatments/cf87f410-54ee-48ef-b654-8443c4fee032/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2690PEZO/"
},
{
"category": "mismatched status",
"detail": "Preview in vitro system [IGVFSM2690PEZO](/in-vitro-systems/IGVFSM2690PEZO/) has in progress subobject treatment [4b5f0d13-ec20-4b91-85f5-a009cd91451f](/treatments/4b5f0d13-ec20-4b91-85f5-a009cd91451f/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2690PEZO/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS6953SXZW](/measurement-sets/IGVFDS6953SXZW/) has sequence file(s) [IGVFFI8030QTUB](/sequence-files/IGVFFI8030QTUB/), [IGVFFI1561CDCC](/sequence-files/IGVFFI1561CDCC/), [IGVFFI4729CJJK](/sequence-files/IGVFFI4729CJJK/), [IGVFFI5012WVBR](/sequence-files/IGVFFI5012WVBR/), [IGVFFI4053AOON](/sequence-files/IGVFFI4053AOON/), [IGVFFI4574RAWF](/sequence-files/IGVFFI4574RAWF/), [IGVFFI2119GCIF](/sequence-files/IGVFFI2119GCIF/), [IGVFFI4998UHTS](/sequence-files/IGVFFI4998UHTS/), [IGVFFI0928COBK](/sequence-files/IGVFFI0928COBK/), [IGVFFI1052RMPD](/sequence-files/IGVFFI1052RMPD/), [IGVFFI2517BPLQ](/sequence-files/IGVFFI2517BPLQ/), [IGVFFI5847MHVI](/sequence-files/IGVFFI5847MHVI/), [IGVFFI8493KNLI](/sequence-files/IGVFFI8493KNLI/), [IGVFFI2036TPCF](/sequence-files/IGVFFI2036TPCF/), [IGVFFI1359LTWK](/sequence-files/IGVFFI1359LTWK/), [IGVFFI8612UQFD](/sequence-files/IGVFFI8612UQFD/), [IGVFFI6137PNDW](/sequence-files/IGVFFI6137PNDW/), [IGVFFI4963RIEA](/sequence-files/IGVFFI4963RIEA/), [IGVFFI3931CYAU](/sequence-files/IGVFFI3931CYAU/), [IGVFFI8600AEJD](/sequence-files/IGVFFI8600AEJD/), [IGVFFI1279HMWP](/sequence-files/IGVFFI1279HMWP/), [IGVFFI1765IFBW](/sequence-files/IGVFFI1765IFBW/), [IGVFFI2220AGJO](/sequence-files/IGVFFI2220AGJO/), [IGVFFI7543TGOO](/sequence-files/IGVFFI7543TGOO/), [IGVFFI5020KJQU](/sequence-files/IGVFFI5020KJQU/), [IGVFFI9997NYUO](/sequence-files/IGVFFI9997NYUO/), [IGVFFI8296FBTZ](/sequence-files/IGVFFI8296FBTZ/), [IGVFFI1687YOLL](/sequence-files/IGVFFI1687YOLL/), [IGVFFI8283DABQ](/sequence-files/IGVFFI8283DABQ/), [IGVFFI0160PPNS](/sequence-files/IGVFFI0160PPNS/), [IGVFFI6092QOBJ](/sequence-files/IGVFFI6092QOBJ/), [IGVFFI0016BDRU](/sequence-files/IGVFFI0016BDRU/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS6953SXZW/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS6953SXZW](/measurement-sets/IGVFDS6953SXZW/) has sequence file(s): [IGVFFI8030QTUB](/sequence-files/IGVFFI8030QTUB/), [IGVFFI1561CDCC](/sequence-files/IGVFFI1561CDCC/), [IGVFFI4729CJJK](/sequence-files/IGVFFI4729CJJK/), [IGVFFI5012WVBR](/sequence-files/IGVFFI5012WVBR/), [IGVFFI4053AOON](/sequence-files/IGVFFI4053AOON/), [IGVFFI4574RAWF](/sequence-files/IGVFFI4574RAWF/), [IGVFFI2119GCIF](/sequence-files/IGVFFI2119GCIF/), [IGVFFI4998UHTS](/sequence-files/IGVFFI4998UHTS/), [IGVFFI0928COBK](/sequence-files/IGVFFI0928COBK/), [IGVFFI1052RMPD](/sequence-files/IGVFFI1052RMPD/), [IGVFFI2517BPLQ](/sequence-files/IGVFFI2517BPLQ/), [IGVFFI5847MHVI](/sequence-files/IGVFFI5847MHVI/), [IGVFFI8493KNLI](/sequence-files/IGVFFI8493KNLI/), [IGVFFI2036TPCF](/sequence-files/IGVFFI2036TPCF/), [IGVFFI1359LTWK](/sequence-files/IGVFFI1359LTWK/), [IGVFFI8612UQFD](/sequence-files/IGVFFI8612UQFD/), [IGVFFI6137PNDW](/sequence-files/IGVFFI6137PNDW/), [IGVFFI4963RIEA](/sequence-files/IGVFFI4963RIEA/), [IGVFFI3931CYAU](/sequence-files/IGVFFI3931CYAU/), [IGVFFI8600AEJD](/sequence-files/IGVFFI8600AEJD/), [IGVFFI1279HMWP](/sequence-files/IGVFFI1279HMWP/), [IGVFFI1765IFBW](/sequence-files/IGVFFI1765IFBW/), [IGVFFI2220AGJO](/sequence-files/IGVFFI2220AGJO/), [IGVFFI7543TGOO](/sequence-files/IGVFFI7543TGOO/), [IGVFFI5020KJQU](/sequence-files/IGVFFI5020KJQU/), [IGVFFI9997NYUO](/sequence-files/IGVFFI9997NYUO/), [IGVFFI8296FBTZ](/sequence-files/IGVFFI8296FBTZ/), [IGVFFI1687YOLL](/sequence-files/IGVFFI1687YOLL/), [IGVFFI8283DABQ](/sequence-files/IGVFFI8283DABQ/), [IGVFFI0160PPNS](/sequence-files/IGVFFI0160PPNS/), [IGVFFI6092QOBJ](/sequence-files/IGVFFI6092QOBJ/), [IGVFFI0016BDRU](/sequence-files/IGVFFI0016BDRU/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS6953SXZW/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS6953SXZW](/measurement-sets/IGVFDS6953SXZW/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS6953SXZW/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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{
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],
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}
],
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{
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
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},
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},
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{
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"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2024-11-22T06:19:48.794569+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000134460/",
"geneid": "ENSG00000134460",
"name": "interleukin 2 receptor subunit alpha",
"status": "released",
"symbol": "IL2RA",
"synonyms": [
"interleukin-2 receptor subunit alpha",
"IL2R",
"TAC antigen",
"IMD41",
"IL-2R subunit alpha",
"CD25",
"IL-2 receptor subunit alpha",
"IDDM10",
"TCGFR",
"p55",
"interleukin 2 receptor, alpha"
]
}
],
"uuid": "d81ce09d-8886-4711-a9db-064cb0fce032"
}