IGVFDS6950EWLX

1{
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11        "igvf:corces_measurementSet_RP021_G4_RNA"
12    ],
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15        "assay_slims": [
16            "gene expression"
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18        "status": "released",
19        "term_name": "single-nucleus RNA sequencing assay"
20    },
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697            {
698                "category": "missing sequence specification",
699                "detail": "Measurement set [IGVFDS6950EWLX](/measurement-sets/IGVFDS6950EWLX/) has sequence file(s): [IGVFFI7251ASNP](/sequence-files/IGVFFI7251ASNP/), [IGVFFI9075PGNP](/sequence-files/IGVFFI9075PGNP/), [IGVFFI7036UDLB](/sequence-files/IGVFFI7036UDLB/), [IGVFFI5687NOXO](/sequence-files/IGVFFI5687NOXO/), [IGVFFI3767DDQE](/sequence-files/IGVFFI3767DDQE/), [IGVFFI8903ILAR](/sequence-files/IGVFFI8903ILAR/), [IGVFFI0584MBNW](/sequence-files/IGVFFI0584MBNW/), [IGVFFI2047KSSM](/sequence-files/IGVFFI2047KSSM/), [IGVFFI2933AJEQ](/sequence-files/IGVFFI2933AJEQ/), [IGVFFI5595TUEI](/sequence-files/IGVFFI5595TUEI/), [IGVFFI0809SIFD](/sequence-files/IGVFFI0809SIFD/), [IGVFFI5230GTDE](/sequence-files/IGVFFI5230GTDE/), [IGVFFI7923RMQG](/sequence-files/IGVFFI7923RMQG/), [IGVFFI8182QWJI](/sequence-files/IGVFFI8182QWJI/), [IGVFFI2845DMZR](/sequence-files/IGVFFI2845DMZR/), [IGVFFI2620OIXO](/sequence-files/IGVFFI2620OIXO/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
700                "level": 50,
701                "level_name": "NOT_COMPLIANT",
702                "name": "audit_missing_seqspec",
703                "path": "/measurement-sets/IGVFDS6950EWLX/"
704            },
705            {
706                "category": "missing strand specificity",
707                "detail": "Measurement set [IGVFDS6950EWLX](/measurement-sets/IGVFDS6950EWLX/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
708                "level": 50,
709                "level_name": "NOT_COMPLIANT",
710                "name": "audit_missing_strand_specificity",
711                "path": "/measurement-sets/IGVFDS6950EWLX/"
712            }
713        ],
714        "WARNING": [
715            {
716                "category": "missing analysis",
717                "detail": "Measurement set [IGVFDS6950EWLX](/measurement-sets/IGVFDS6950EWLX/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
718                "level": 40,
719                "level_name": "WARNING",
720                "name": "audit_input_for",
721                "path": "/measurement-sets/IGVFDS6950EWLX/"
722            }
723        ]
724    },
725    "award": {
726        "@id": "/awards/HG012076/",
727        "component": "mapping",
728        "contact_pi": {
729            "@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
730            "title": "Ansuman Satpathy"
731        },
732        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
733    },
734    "control_for": [],
735    "controlled_access": false,
736    "creation_timestamp": "2025-03-19T21:44:05.589569+00:00",
737    "data_use_limitation_summaries": [
738        "No limitations"
739    ],
740    "donors": [
741        {
742            "@id": "/human-donors/IGVFDO3795BUZW/",
743            "accession": "IGVFDO3795BUZW",
744            "aliases": [
745                "igvf:corces_donor_BANN1311"
746            ],
747            "sex": "male",
748            "status": "preview",
749            "taxa": "Homo sapiens"
750        },
751        {
752            "@id": "/human-donors/IGVFDO0180JQCL/",
753            "accession": "IGVFDO0180JQCL",
754            "aliases": [
755                "igvf:corces_donor_BANN1344"
756            ],
757            "sex": "female",
758            "status": "preview",
759            "taxa": "Homo sapiens"
760        },
761        {
762            "@id": "/human-donors/IGVFDO6013FYCW/",
763            "accession": "IGVFDO6013FYCW",
764            "aliases": [
765                "igvf:corces_donor_BANN0912"
766            ],
767            "sex": "male",
768            "status": "preview",
769            "taxa": "Homo sapiens"
770        },
771        {
772            "@id": "/human-donors/IGVFDO7095OCLJ/",
773            "accession": "IGVFDO7095OCLJ",
774            "aliases": [
775                "igvf:corces_donor_BANN9917"
776            ],
777            "sex": "female",
778            "status": "preview",
779            "taxa": "Homo sapiens"
780        },
781        {
782            "@id": "/human-donors/IGVFDO9247BEUS/",
783            "accession": "IGVFDO9247BEUS",
784            "aliases": [
785                "igvf:corces_donor_BANN2149"
786            ],
787            "sex": "male",
788            "status": "preview",
789            "taxa": "Homo sapiens"
790        },
791        {
792            "@id": "/human-donors/IGVFDO3317CNEB/",
793            "accession": "IGVFDO3317CNEB",
794            "aliases": [
795                "igvf:corces_donor_BANN1902"
796            ],
797            "sex": "male",
798            "status": "preview",
799            "taxa": "Homo sapiens"
800        },
801        {
802            "@id": "/human-donors/IGVFDO6316TGCK/",
803            "accession": "IGVFDO6316TGCK",
804            "aliases": [
805                "igvf:corces_donor_BANN1814"
806            ],
807            "sex": "male",
808            "status": "preview",
809            "taxa": "Homo sapiens"
810        },
811        {
812            "@id": "/human-donors/IGVFDO8547HLIG/",
813            "accession": "IGVFDO8547HLIG",
814            "aliases": [
815                "igvf:corces_donor_BANN1812"
816            ],
817            "sex": "female",
818            "status": "preview",
819            "taxa": "Homo sapiens"
820        },
821        {
822            "@id": "/human-donors/IGVFDO9236YUAT/",
823            "accession": "IGVFDO9236YUAT",
824            "aliases": [
825                "igvf:corces_donor_BANN0227"
826            ],
827            "sex": "male",
828            "status": "preview",
829            "taxa": "Homo sapiens"
830        },
831        {
832            "@id": "/human-donors/IGVFDO2045AFUW/",
833            "accession": "IGVFDO2045AFUW",
834            "aliases": [
835                "igvf:corces_donor_BANN1404"
836            ],
837            "sex": "male",
838            "status": "preview",
839            "taxa": "Homo sapiens"
840        },
841        {
842            "@id": "/human-donors/IGVFDO0877AIRF/",
843            "accession": "IGVFDO0877AIRF",
844            "aliases": [
845                "igvf:corces_donor_BANN0417"
846            ],
847            "sex": "male",
848            "status": "preview",
849            "taxa": "Homo sapiens"
850        },
851        {
852            "@id": "/human-donors/IGVFDO2848YHMH/",
853            "accession": "IGVFDO2848YHMH",
854            "aliases": [
855                "igvf:corces_donor_BANN2038"
856            ],
857            "sex": "male",
858            "status": "preview",
859            "taxa": "Homo sapiens"
860        },
861        {
862            "@id": "/human-donors/IGVFDO4438WASY/",
863            "accession": "IGVFDO4438WASY",
864            "aliases": [
865                "igvf:corces_donor_BANN1644"
866            ],
867            "sex": "male",
868            "status": "preview",
869            "taxa": "Homo sapiens"
870        },
871        {
872            "@id": "/human-donors/IGVFDO8046LKFZ/",
873            "accession": "IGVFDO8046LKFZ",
874            "aliases": [
875                "igvf:corces_donor_BANN1242"
876            ],
877            "sex": "male",
878            "status": "preview",
879            "taxa": "Homo sapiens"
880        },
881        {
882            "@id": "/human-donors/IGVFDO4783EEYU/",
883            "accession": "IGVFDO4783EEYU",
884            "aliases": [
885                "igvf:corces_donor_BANN1865"
886            ],
887            "sex": "male",
888            "status": "preview",
889            "taxa": "Homo sapiens"
890        },
891        {
892            "@id": "/human-donors/IGVFDO6489DOPG/",
893            "accession": "IGVFDO6489DOPG",
894            "aliases": [
895                "igvf:corces_donor_BANN2118"
896            ],
897            "sex": "female",
898            "status": "preview",
899            "taxa": "Homo sapiens"
900        }
901    ],
902    "externally_hosted": false,
903    "file_set_type": "experimental data",
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908            "aliases": [
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930            "accession": "IGVFFI9075PGNP",
931            "aliases": [
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950        },
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954            "aliases": [
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959            "creation_timestamp": "2025-03-20T22:42:33.963677+00:00",
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976            "accession": "IGVFFI5687NOXO",
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980            "content_type": "reads",
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982            "creation_timestamp": "2025-03-20T22:42:36.380136+00:00",
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999            "accession": "IGVFFI3767DDQE",
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1019        },
1020        {
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1042        },
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1046            "aliases": [
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1065        },
1066        {
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1068            "accession": "IGVFFI2047KSSM",
1069            "aliases": [
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1088        },
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1091            "accession": "IGVFFI2933AJEQ",
1092            "aliases": [
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1111        },
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1114            "accession": "IGVFFI5595TUEI",
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1129                "term_name": "Illumina NovaSeq X"
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1132            "submitted_file_name": "Multiome_RNA_RP021_G4_L004_P068_S2_L001_I1_001.fastq.gz",
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1134        },
1135        {
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1137            "accession": "IGVFFI0809SIFD",
1138            "aliases": [
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1275    "lab": {
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1277        "title": "Ryan Corces, Gladstone Institute UCSF"
1278    },
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1280    "onlist_files": [
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1284    "preferred_assay_title": "10x multiome",
1285    "protocols": [
1286        "https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn"
1287    ],
1288    "related_multiome_datasets": [
1289        {
1290            "@id": "/measurement-sets/IGVFDS8445THOS/",
1291            "accession": "IGVFDS8445THOS",
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1293        }
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1298            "@type": [
1299                "MultiplexedSample",
1300                "Sample",
1301                "Item"
1302            ],
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1304            "aliases": [
1305                "igvf:corces_multiplexedSample_RP021_G4"
1306            ],
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1308                "tissue",
1309                "multiplexed sample"
1310            ],
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1316                },
1317                {
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1319                    "status": "in progress",
1320                    "term_name": "Parkinson's disease"
1321                },
1322                {
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1325                    "term_name": "cerebral amyloid angiopathy"
1326                }
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1340                    "@type": [
1341                        "SampleTerm",
1342                        "OntologyTerm",
1343                        "Item"
1344                    ],
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1348                },
1349                {
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1351                    "@type": [
1352                        "SampleTerm",
1353                        "OntologyTerm",
1354                        "Item"
1355                    ],
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1358                    "term_name": "substantia nigra"
1359                },
1360                {
1361                    "@id": "/sample-terms/UBERON_0002740/",
1362                    "@type": [
1363                        "SampleTerm",
1364                        "OntologyTerm",
1365                        "Item"
1366                    ],
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1368                    "summary": "posterior cingulate gyrus",
1369                    "term_name": "posterior cingulate gyrus"
1370                },
1371                {
1372                    "@id": "/sample-terms/UBERON_0002771/",
1373                    "@type": [
1374                        "SampleTerm",
1375                        "OntologyTerm",
1376                        "Item"
1377                    ],
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1381                }
1382            ],
1383            "status": "preview",
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1385            "taxa": "Homo sapiens",
1386            "treatments": []
1387        }
1388    ],
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1390    "status": "preview",
1391    "submitted_by": {
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1393        "title": "Ryan Corces"
1394    },
1395    "submitted_files_timestamp": "2025-03-20T22:42:08.221062+00:00",
1396    "summary": "single-nucleus RNA sequencing assay (10x multiome)",
1397    "uuid": "47ffa918-7b97-4e6d-ae60-2eb0a8ace837"
1398}