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IGVFDS6946BUZB

released
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: left cerebral cortex tissue, female, Mus musculus CAST/EiJ (72 days); left cerebral cortex tissue, male, Mus musculus C57BL/6J (72 days); ... and 6 more samples
Protocols
Aliases
ali-mortazavi:B01_13D_illumina

Sequencing Results (Illumina)

4 items
Read Names
fastq
reads
R2
1
Read 2
AAC2L2NHV
1
6.7 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
2
Read 1
AAC2JNKHV
1
13 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
1
Read 1
AAC2L2NHV
1
12 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
2
Read 2
AAC2JNKHV
1
7.1 GB
Ali Mortazavi, UCI
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CAST/EiJ (72 days); left cerebral cortex tissue, male, Mus musculus C57BL/6J (72 days); ... and 6 more samples

Donors

8 items
Aliases
  • ali-mortazavi:108_CASTJ_10F
female
Mus musculus
  • ali-mortazavi:105_CASTJ_10M
male
Mus musculus
  • ali-mortazavi:119_B6J_10M
male
Mus musculus
  • ali-mortazavi:107_CASTJ_10M
male
Mus musculus
  • ali-mortazavi:117_B6J_10M
male
Mus musculus
  • ali-mortazavi:118_B6J_10F
female
Mus musculus
  • ali-mortazavi:106_CASTJ_10F
female
Mus musculus
  • ali-mortazavi:120_B6J_10F
female
Mus musculus

Assay Details

Sequencing Library Types
mRNA enriched

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:IGVF_B01_subpool_4
Ali Mortazavi, UCI

Attribution

Award
HG012077
Principal Investigator(s)
Contact P.I.
Ali Mortazavi
Lab
Ali Mortazavi, UCI