IGVFDS6915EFKE

1{
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10    "aliases": [
11        "igvf:corces_measurementSet_RP013_G4_RNA"
12    ],
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14        "@id": "/assay-terms/OBI_0003109/",
15        "assay_slims": [
16            "gene expression"
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18        "status": "released",
19        "term_name": "single-nucleus RNA sequencing assay"
20    },
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703            {
704                "category": "mismatched status",
705                "detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [956b5474-2acd-4c13-bbc1-dd81dba0622a](/phenotypic-features/956b5474-2acd-4c13-bbc1-dd81dba0622a/).",
706                "level": 30,
707                "level_name": "INTERNAL_ACTION",
708                "name": "audit_item_status",
709                "path": "/human-donors/IGVFDO4108VCBA/"
710            },
711            {
712                "category": "mismatched status",
713                "detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [d2909f2d-5e28-4e1f-859d-c562f1c883af](/phenotypic-features/d2909f2d-5e28-4e1f-859d-c562f1c883af/).",
714                "level": 30,
715                "level_name": "INTERNAL_ACTION",
716                "name": "audit_item_status",
717                "path": "/human-donors/IGVFDO4108VCBA/"
718            },
719            {
720                "category": "mismatched status",
721                "detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [aff60c46-5191-4203-ac06-8623d7e676fa](/phenotypic-features/aff60c46-5191-4203-ac06-8623d7e676fa/).",
722                "level": 30,
723                "level_name": "INTERNAL_ACTION",
724                "name": "audit_item_status",
725                "path": "/human-donors/IGVFDO4108VCBA/"
726            }
727        ],
728        "NOT_COMPLIANT": [
729            {
730                "category": "missing sequence specification",
731                "detail": "Measurement set [IGVFDS6915EFKE](/measurement-sets/IGVFDS6915EFKE/) has sequence file(s): [IGVFFI6957TIXK](/sequence-files/IGVFFI6957TIXK/), [IGVFFI4692IFSR](/sequence-files/IGVFFI4692IFSR/), [IGVFFI4074UYJD](/sequence-files/IGVFFI4074UYJD/), [IGVFFI6926AGXG](/sequence-files/IGVFFI6926AGXG/), [IGVFFI4868CADE](/sequence-files/IGVFFI4868CADE/), [IGVFFI0540RLVG](/sequence-files/IGVFFI0540RLVG/), [IGVFFI0672YNGL](/sequence-files/IGVFFI0672YNGL/), [IGVFFI3921PRJE](/sequence-files/IGVFFI3921PRJE/), [IGVFFI1621XVYV](/sequence-files/IGVFFI1621XVYV/), [IGVFFI5535TKKH](/sequence-files/IGVFFI5535TKKH/), [IGVFFI3441NDZX](/sequence-files/IGVFFI3441NDZX/), [IGVFFI8136EMLN](/sequence-files/IGVFFI8136EMLN/), [IGVFFI2475XUUD](/sequence-files/IGVFFI2475XUUD/), [IGVFFI6867WUDB](/sequence-files/IGVFFI6867WUDB/), [IGVFFI0608WGYO](/sequence-files/IGVFFI0608WGYO/), [IGVFFI2348NKGX](/sequence-files/IGVFFI2348NKGX/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
732                "level": 50,
733                "level_name": "NOT_COMPLIANT",
734                "name": "audit_missing_seqspec",
735                "path": "/measurement-sets/IGVFDS6915EFKE/"
736            },
737            {
738                "category": "missing strand specificity",
739                "detail": "Measurement set [IGVFDS6915EFKE](/measurement-sets/IGVFDS6915EFKE/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
740                "level": 50,
741                "level_name": "NOT_COMPLIANT",
742                "name": "audit_missing_strand_specificity",
743                "path": "/measurement-sets/IGVFDS6915EFKE/"
744            }
745        ],
746        "WARNING": [
747            {
748                "category": "missing analysis",
749                "detail": "Measurement set [IGVFDS6915EFKE](/measurement-sets/IGVFDS6915EFKE/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
750                "level": 40,
751                "level_name": "WARNING",
752                "name": "audit_input_for",
753                "path": "/measurement-sets/IGVFDS6915EFKE/"
754            }
755        ]
756    },
757    "award": {
758        "@id": "/awards/HG012076/",
759        "component": "mapping",
760        "contact_pi": {
761            "@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
762            "title": "Ansuman Satpathy"
763        },
764        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
765    },
766    "control_for": [],
767    "controlled_access": false,
768    "creation_timestamp": "2025-03-19T21:42:52.083494+00:00",
769    "data_use_limitation_summaries": [
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771    ],
772    "donors": [
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775            "accession": "IGVFDO0698ZMAQ",
776            "aliases": [
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778            ],
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780            "status": "preview",
781            "taxa": "Homo sapiens"
782        },
783        {
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785            "accession": "IGVFDO7606UOXI",
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788            ],
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790            "status": "preview",
791            "taxa": "Homo sapiens"
792        },
793        {
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795            "accession": "IGVFDO4273OHGB",
796            "aliases": [
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798            ],
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800            "status": "preview",
801            "taxa": "Homo sapiens"
802        },
803        {
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805            "accession": "IGVFDO4170HAEN",
806            "aliases": [
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808            ],
809            "sex": "male",
810            "status": "preview",
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812        },
813        {
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816            "aliases": [
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818            ],
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820            "status": "preview",
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822        },
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825            "accession": "IGVFDO0180JQCL",
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828            ],
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830            "status": "preview",
831            "taxa": "Homo sapiens"
832        },
833        {
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836            "aliases": [
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838            ],
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840            "status": "preview",
841            "taxa": "Homo sapiens"
842        },
843        {
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846            "aliases": [
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848            ],
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850            "status": "preview",
851            "taxa": "Homo sapiens"
852        },
853        {
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855            "accession": "IGVFDO7315DYIP",
856            "aliases": [
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858            ],
859            "sex": "female",
860            "status": "preview",
861            "taxa": "Homo sapiens"
862        },
863        {
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866            "aliases": [
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870            "status": "preview",
871            "taxa": "Homo sapiens"
872        },
873        {
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875            "accession": "IGVFDO7754VJKM",
876            "aliases": [
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878            ],
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880            "status": "preview",
881            "taxa": "Homo sapiens"
882        },
883        {
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885            "accession": "IGVFDO8155MCUV",
886            "aliases": [
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888            ],
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892        },
893        {
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896            "aliases": [
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902        },
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1002        },
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1106                "status": "released",
1107                "term_name": "Illumina NovaSeq X"
1108            },
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1110            "submitted_file_name": "Multiome_RNA_RP013_G4_L004_P062_S24_L007_I1_001.fastq.gz",
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1113        {
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1115            "accession": "IGVFFI1621XVYV",
1116            "aliases": [
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1126            "sequencing_platform": {
1127                "@id": "/platform-terms/EFO_0022840/",
1128                "status": "released",
1129                "term_name": "Illumina NovaSeq X"
1130            },
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1132            "submitted_file_name": "Multiome_RNA_RP013_G4_L004_P062_S24_L008_I1_001.fastq.gz",
1133            "upload_status": "validated"
1134        },
1135        {
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1137            "accession": "IGVFFI5535TKKH",
1138            "aliases": [
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1140            ],
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1142            "controlled_access": false,
1143            "creation_timestamp": "2025-03-20T21:05:43.931884+00:00",
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1152            },
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1154            "submitted_file_name": "Multiome_RNA_RP013_G4_L004_P062_S24_L008_R1_001.fastq.gz",
1155            "upload_status": "validated"
1156        },
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1159            "accession": "IGVFFI3441NDZX",
1160            "aliases": [
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1162            ],
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1296    "onlist_files": [
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1298    ],
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1300    "preferred_assay_title": "10x multiome",
1301    "protocols": [
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1314            "@type": [
1315                "MultiplexedSample",
1316                "Sample",
1317                "Item"
1318            ],
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1320            "aliases": [
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1332                },
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1337                },
1338                {
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1341                    "term_name": "multiple sclerosis"
1342                },
1343                {
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1347                },
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1366                    "@type": [
1367                        "SampleTerm",
1368                        "OntologyTerm",
1369                        "Item"
1370                    ],
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1374                },
1375                {
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1377                    "@type": [
1378                        "SampleTerm",
1379                        "OntologyTerm",
1380                        "Item"
1381                    ],
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1385                },
1386                {
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1388                    "@type": [
1389                        "SampleTerm",
1390                        "OntologyTerm",
1391                        "Item"
1392                    ],
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1396                },
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1399                    "@type": [
1400                        "SampleTerm",
1401                        "OntologyTerm",
1402                        "Item"
1403                    ],
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1407                }
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1411            "taxa": "Homo sapiens",
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1422    "summary": "single-nucleus RNA sequencing assay (10x multiome)",
1423    "uuid": "0538e07d-3b7e-4d5b-bdb4-97e126ca26b3"
1424}