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INDEXED
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MeasurementSet
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IGVFDS6911ZLIV
IGVFDS6911ZLIV
released
Json view
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Assay Term
single-cell RNA sequencing assay
Sample Summaries
bone marrow cell (cellular sub pool: SS-PKR 212), Homo sapiens
Protocols
https://www.protocols.io/view/share-seq-v1-bmbik2ke
Aliases
bradley-bernstein:scRNA Lib 174
buenrostro-bernstein:scRNA Lib 174
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0352ENLP
fastq
reads
R1
177
IGVFFI4141XONE
Illumina NovaSeq 6000
15 GB
Jason Buenrostro, Broad
validated
IGVFFI1677MAQO
fastq
reads
R1
176
IGVFFI2774OFKW
Illumina NovaSeq 6000
10 GB
Jason Buenrostro, Broad
validated
IGVFFI6627SHNX
fastq
reads
R2
176
IGVFFI2774OFKW
Illumina NovaSeq 6000
18 GB
Jason Buenrostro, Broad
validated
IGVFFI7926BMKR
fastq
reads
R2
177
IGVFFI4141XONE
Illumina NovaSeq 6000
25 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM2223HAHK
PrimaryCell
bone marrow
bone marrow cell (cellular sub pool: SS-PKR 212), Homo sapiens
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO0609CPVJ
bradley-bernstein:Donor 1992
buenrostro-bernstein:Donor 1992
unspecified
Homo sapiens
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5278IBSB
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
buenrostro-bernstein:human-bone-marrow-analysis-set
Jason Buenrostro, Broad
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS2721AQQO
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
bradley-bernstein:scATAC Lib 625
buenrostro-bernstein:scATAC Lib 625
Jason Buenrostro, Broad
Attribution
Award
HG011986
Principal Investigator(s)
Bradley Bernstein
,
Jason Buenrostro
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad