{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS6835GFNB/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS6835GFNB",
"aliases": [
"ali-mortazavi:005_67L_illumina"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM3610EBLH](/multiplexed-samples/IGVFSM3610EBLH/) has in progress subobject tabular file [IGVFFI2030VAID](/tabular-files/IGVFFI2030VAID/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM3610EBLH/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM3610EBLH](/multiplexed-samples/IGVFSM3610EBLH/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM3610EBLH/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS6835GFNB](/measurement-sets/IGVFDS6835GFNB/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS6835GFNB/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS6835GFNB](/measurement-sets/IGVFDS6835GFNB/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS6835GFNB/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS6835GFNB](/measurement-sets/IGVFDS6835GFNB/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS6835GFNB/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping",
"contact_pi": {
"@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
"control_for": [],
"creation_timestamp": "2023-10-07T02:05:20.754892+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO5502NJPS/",
"accession": "IGVFDO5502NJPS",
"aliases": [
"ali-mortazavi:038_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0681EHNP/",
"accession": "IGVFDO0681EHNP",
"aliases": [
"ali-mortazavi:052_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0751WQHI/",
"accession": "IGVFDO0751WQHI",
"aliases": [
"ali-mortazavi:080_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2319OUEC/",
"accession": "IGVFDO2319OUEC",
"aliases": [
"ali-mortazavi:045_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5539RLXJ/",
"accession": "IGVFDO5539RLXJ",
"aliases": [
"ali-mortazavi:029_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3603MEIO/",
"accession": "IGVFDO3603MEIO",
"aliases": [
"ali-mortazavi:084_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7007WBAX/",
"accession": "IGVFDO7007WBAX",
"aliases": [
"ali-mortazavi:016_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7610XXRR/",
"accession": "IGVFDO7610XXRR",
"aliases": [
"ali-mortazavi:072_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9202WGJZ/",
"accession": "IGVFDO9202WGJZ",
"aliases": [
"ali-mortazavi:085_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1643VEDI/",
"accession": "IGVFDO1643VEDI",
"aliases": [
"ali-mortazavi:019_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6066JIEJ/",
"accession": "IGVFDO6066JIEJ",
"aliases": [
"ali-mortazavi:043_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6141KSSQ/",
"accession": "IGVFDO6141KSSQ",
"aliases": [
"ali-mortazavi:024_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
"aliases": [
"ali-mortazavi:046_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5177QEWF/",
"accession": "IGVFDO5177QEWF",
"aliases": [
"ali-mortazavi:063_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3436ZMLY/",
"accession": "IGVFDO3436ZMLY",
"aliases": [
"ali-mortazavi:091_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9374WXKK/",
"accession": "IGVFDO9374WXKK",
"aliases": [
"ali-mortazavi:028_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5258MBVH/",
"accession": "IGVFDO5258MBVH",
"aliases": [
"ali-mortazavi:040_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9890MXGN/",
"accession": "IGVFDO9890MXGN",
"aliases": [
"ali-mortazavi:068_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5737FRWD/",
"accession": "IGVFDO5737FRWD",
"aliases": [
"ali-mortazavi:081_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5183UZGS/",
"accession": "IGVFDO5183UZGS",
"aliases": [
"ali-mortazavi:021_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6607QZPA/",
"accession": "IGVFDO6607QZPA",
"aliases": [
"ali-mortazavi:050_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1452VDIT/",
"accession": "IGVFDO1452VDIT",
"aliases": [
"ali-mortazavi:035_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3640WUBU/",
"accession": "IGVFDO3640WUBU",
"aliases": [
"ali-mortazavi:066_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9510ILZG/",
"accession": "IGVFDO9510ILZG",
"aliases": [
"ali-mortazavi:053_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3762EAWT/",
"accession": "IGVFDO3762EAWT",
"aliases": [
"ali-mortazavi:076_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8904OIIT/",
"accession": "IGVFDO8904OIIT",
"aliases": [
"ali-mortazavi:044_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1477BPVO/",
"accession": "IGVFDO1477BPVO",
"aliases": [
"ali-mortazavi:088_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6112GRYR/",
"accession": "IGVFDO6112GRYR",
"aliases": [
"ali-mortazavi:059_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6219LVKW/",
"accession": "IGVFDO6219LVKW",
"aliases": [
"ali-mortazavi:032_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9560CEGZ/",
"accession": "IGVFDO9560CEGZ",
"aliases": [
"ali-mortazavi:061_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6614NNPY/",
"accession": "IGVFDO6614NNPY",
"aliases": [
"ali-mortazavi:089_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5085MJSP/",
"accession": "IGVFDO5085MJSP",
"aliases": [
"ali-mortazavi:048_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7951JDSP/",
"accession": "IGVFDO7951JDSP",
"aliases": [
"ali-mortazavi:026_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2831PZHE/",
"accession": "IGVFDO2831PZHE",
"aliases": [
"ali-mortazavi:077_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0813DZTW/",
"accession": "IGVFDO0813DZTW",
"aliases": [
"ali-mortazavi:069_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4707SGWM/",
"accession": "IGVFDO4707SGWM",
"aliases": [
"ali-mortazavi:051_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7254QNQZ/",
"accession": "IGVFDO7254QNQZ",
"aliases": [
"ali-mortazavi:031_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2517TXOT/",
"accession": "IGVFDO2517TXOT",
"aliases": [
"ali-mortazavi:092_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0026YRCR/",
"accession": "IGVFDO0026YRCR",
"aliases": [
"ali-mortazavi:018_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8152XDDC/",
"accession": "IGVFDO8152XDDC",
"aliases": [
"ali-mortazavi:090_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5872DFML/",
"accession": "IGVFDO5872DFML",
"aliases": [
"ali-mortazavi:094_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3655FKMR/",
"accession": "IGVFDO3655FKMR",
"aliases": [
"ali-mortazavi:025_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5523UFUN/",
"accession": "IGVFDO5523UFUN",
"aliases": [
"ali-mortazavi:070_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4788BIQB/",
"accession": "IGVFDO4788BIQB",
"aliases": [
"ali-mortazavi:020_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7255VZBN/",
"accession": "IGVFDO7255VZBN",
"aliases": [
"ali-mortazavi:062_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8322VYDU/",
"accession": "IGVFDO8322VYDU",
"aliases": [
"ali-mortazavi:093_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2292YGGE/",
"accession": "IGVFDO2292YGGE",
"aliases": [
"ali-mortazavi:049_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4725SNCJ/",
"accession": "IGVFDO4725SNCJ",
"aliases": [
"ali-mortazavi:017_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0430HQIU/",
"accession": "IGVFDO0430HQIU",
"aliases": [
"ali-mortazavi:041_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1744FDIX/",
"accession": "IGVFDO1744FDIX",
"aliases": [
"ali-mortazavi:036_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0624KKTV/",
"accession": "IGVFDO0624KKTV",
"aliases": [
"ali-mortazavi:030_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8958JQIY/",
"accession": "IGVFDO8958JQIY",
"aliases": [
"ali-mortazavi:047_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2645GUSC/",
"accession": "IGVFDO2645GUSC",
"aliases": [
"ali-mortazavi:060_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9142EUBJ/",
"accession": "IGVFDO9142EUBJ",
"aliases": [
"ali-mortazavi:096_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4469VYEZ/",
"accession": "IGVFDO4469VYEZ",
"aliases": [
"ali-mortazavi:073_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7062NBTQ/",
"accession": "IGVFDO7062NBTQ",
"aliases": [
"ali-mortazavi:079_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2301HIUQ/",
"accession": "IGVFDO2301HIUQ",
"aliases": [
"ali-mortazavi:067_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3207TERA/",
"accession": "IGVFDO3207TERA",
"aliases": [
"ali-mortazavi:086_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3662UKFW/",
"accession": "IGVFDO3662UKFW",
"aliases": [
"ali-mortazavi:087_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0853BCOL/",
"accession": "IGVFDO0853BCOL",
"aliases": [
"ali-mortazavi:058_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2106EEWB/",
"accession": "IGVFDO2106EEWB",
"aliases": [
"ali-mortazavi:078_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9340WGNV/",
"accession": "IGVFDO9340WGNV",
"aliases": [
"ali-mortazavi:037_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9199TPBC/",
"accession": "IGVFDO9199TPBC",
"aliases": [
"ali-mortazavi:071_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0696DMIA/",
"accession": "IGVFDO0696DMIA",
"aliases": [
"ali-mortazavi:057_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7957DMLJ/",
"accession": "IGVFDO7957DMLJ",
"aliases": [
"ali-mortazavi:033_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI7680JGZO/",
"accession": "IGVFFI7680JGZO",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T05:41:58.379998+00:00",
"file_format": "fastq",
"file_size": 10491968667,
"href": "/sequence-files/IGVFFI7680JGZO/@@download/IGVFFI7680JGZO.fastq.gz",
"md5sum": "9f95377855e493f3bc078512e603272e",
"s3_uri": "s3://igvf-files/2023/10/07/2e513442-21ed-4fdb-a7be-9593175f2792/IGVFFI7680JGZO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova1/igvf_005_B13_D_nova_N1_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2208BBCD/",
"accession": "IGVFFI2208BBCD",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T05:46:12.508830+00:00",
"file_format": "fastq",
"file_size": 5387167837,
"href": "/sequence-files/IGVFFI2208BBCD/@@download/IGVFFI2208BBCD.fastq.gz",
"md5sum": "67163ef42eb5e4c2611a439bab97f114",
"s3_uri": "s3://igvf-files/2023/10/07/306dbe8f-5efe-4132-afb9-ef8bf9734035/IGVFFI2208BBCD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova1/igvf_005_B13_D_nova_N1_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9245XUZI/",
"accession": "IGVFFI9245XUZI",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T06:20:02.982273+00:00",
"file_format": "fastq",
"file_size": 5402211935,
"href": "/sequence-files/IGVFFI9245XUZI/@@download/IGVFFI9245XUZI.fastq.gz",
"md5sum": "bff9c3e33c792c5b54791610307cd887",
"s3_uri": "s3://igvf-files/2023/10/07/a985d0e7-19cd-45dc-9e2b-41a6531ae29e/IGVFFI9245XUZI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova2/igvf_005_B13_D_nova_N2_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5028VHPS/",
"accession": "IGVFFI5028VHPS",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T06:06:48.127966+00:00",
"file_format": "fastq",
"file_size": 5469352027,
"href": "/sequence-files/IGVFFI5028VHPS/@@download/IGVFFI5028VHPS.fastq.gz",
"md5sum": "3d45e5aad4123bf7ab9d981fd9c65c9c",
"s3_uri": "s3://igvf-files/2023/10/07/644fd140-4292-4873-a206-798c2aea8a9c/IGVFFI5028VHPS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova2/igvf_005_B13_D_nova_N2_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3577OMBM/",
"accession": "IGVFFI3577OMBM",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T06:09:05.245553+00:00",
"file_format": "fastq",
"file_size": 10511538451,
"href": "/sequence-files/IGVFFI3577OMBM/@@download/IGVFFI3577OMBM.fastq.gz",
"md5sum": "81554a419906ef6ebf4b30d60a74f8b0",
"s3_uri": "s3://igvf-files/2023/10/07/ad81b38e-2094-457c-8eb0-e2e94222dfff/IGVFFI3577OMBM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova2/igvf_005_B13_D_nova_N2_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9949TLFF/",
"accession": "IGVFFI9949TLFF",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T05:32:50.982636+00:00",
"file_format": "fastq",
"file_size": 5483920294,
"href": "/sequence-files/IGVFFI9949TLFF/@@download/IGVFFI9949TLFF.fastq.gz",
"md5sum": "6afc8c48fab3226bb018fe05866987b9",
"s3_uri": "s3://igvf-files/2023/10/07/ae764927-0cd3-4ff6-9286-5bf3e1092b42/IGVFFI9949TLFF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova1/igvf_005_B13_D_nova_N1_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4969VCOL/",
"accession": "IGVFFI4969VCOL",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T05:39:39.994920+00:00",
"file_format": "fastq",
"file_size": 5464546907,
"href": "/sequence-files/IGVFFI4969VCOL/@@download/IGVFFI4969VCOL.fastq.gz",
"md5sum": "4a3c2ee8227098a755e40adf9e76c6b6",
"s3_uri": "s3://igvf-files/2023/10/07/61703208-ca28-418a-834b-b38324ec3696/IGVFFI4969VCOL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova1/igvf_005_B13_D_nova_N1_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7456NGNU/",
"accession": "IGVFFI7456NGNU",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T05:48:28.280632+00:00",
"file_format": "fastq",
"file_size": 10499385234,
"href": "/sequence-files/IGVFFI7456NGNU/@@download/IGVFFI7456NGNU.fastq.gz",
"md5sum": "e1b7d2c326d3cd08409e74a377902721",
"s3_uri": "s3://igvf-files/2023/10/07/519d9b25-663f-4a78-b42e-d6eb6fa9b2e4/IGVFFI7456NGNU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova1/igvf_005_B13_D_nova_N1_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5496DVYA/",
"accession": "IGVFFI5496DVYA",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T05:52:56.644550+00:00",
"file_format": "fastq",
"file_size": 5385317685,
"href": "/sequence-files/IGVFFI5496DVYA/@@download/IGVFFI5496DVYA.fastq.gz",
"md5sum": "558863fdbefb0abbacec51f91e44ac01",
"s3_uri": "s3://igvf-files/2023/10/07/7ce60f70-4a32-440b-b304-ae3229b0b1e0/IGVFFI5496DVYA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova1/igvf_005_B13_D_nova_N1_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4114UPVI/",
"accession": "IGVFFI4114UPVI",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T05:35:11.182299+00:00",
"file_format": "fastq",
"file_size": 10534374869,
"href": "/sequence-files/IGVFFI4114UPVI/@@download/IGVFFI4114UPVI.fastq.gz",
"md5sum": "dee91189dc4a79ecb33da87ff22f0e64",
"s3_uri": "s3://igvf-files/2023/10/07/6476e37b-41b4-4eeb-a999-68b8d9852ecd/IGVFFI4114UPVI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova1/igvf_005_B13_D_nova_N1_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6921TGAX/",
"accession": "IGVFFI6921TGAX",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T06:13:27.336750+00:00",
"file_format": "fastq",
"file_size": 5434088089,
"href": "/sequence-files/IGVFFI6921TGAX/@@download/IGVFFI6921TGAX.fastq.gz",
"md5sum": "a017ddb6668d9f36dec1078a57a5fd7a",
"s3_uri": "s3://igvf-files/2023/10/07/c70e36cb-14a8-45d0-9713-4ca30c917ea7/IGVFFI6921TGAX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova2/igvf_005_B13_D_nova_N2_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5125LYGX/",
"accession": "IGVFFI5125LYGX",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T05:28:19.416827+00:00",
"file_format": "fastq",
"file_size": 10609763350,
"href": "/sequence-files/IGVFFI5125LYGX/@@download/IGVFFI5125LYGX.fastq.gz",
"md5sum": "cb94089b8924ed72050f30029c62def3",
"s3_uri": "s3://igvf-files/2023/10/07/05fb427c-4fb3-4209-af4f-ca957dce69d6/IGVFFI5125LYGX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova1/igvf_005_B13_D_nova_N1_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3927EZKE/",
"accession": "IGVFFI3927EZKE",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T05:59:58.787321+00:00",
"file_format": "fastq",
"file_size": 5494522646,
"href": "/sequence-files/IGVFFI3927EZKE/@@download/IGVFFI3927EZKE.fastq.gz",
"md5sum": "b63c2f0d6f7c27a1765c8c3ed193a681",
"s3_uri": "s3://igvf-files/2023/10/07/b48cc6ba-b0c3-47b9-bd91-f6cce7ee1d59/IGVFFI3927EZKE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova2/igvf_005_B13_D_nova_N2_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3846RPTV/",
"accession": "IGVFFI3846RPTV",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T06:15:45.320453+00:00",
"file_format": "fastq",
"file_size": 10529215269,
"href": "/sequence-files/IGVFFI3846RPTV/@@download/IGVFFI3846RPTV.fastq.gz",
"md5sum": "bfe4d1f60936b8bfda2f695d9223cd4d",
"s3_uri": "s3://igvf-files/2023/10/07/62326f6d-4250-4fbe-81ca-d67f4ed700c6/IGVFFI3846RPTV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova2/igvf_005_B13_D_nova_N2_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8559UKEP/",
"accession": "IGVFFI8559UKEP",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T05:55:21.415579+00:00",
"file_format": "fastq",
"file_size": 10592627422,
"href": "/sequence-files/IGVFFI8559UKEP/@@download/IGVFFI8559UKEP.fastq.gz",
"md5sum": "11b29e96b0f228995accd89721f4e0a0",
"s3_uri": "s3://igvf-files/2023/10/07/519b1bfe-8dfd-446b-8b60-6777a6346874/IGVFFI8559UKEP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova2/igvf_005_B13_D_nova_N2_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0075MOVB/",
"accession": "IGVFFI0075MOVB",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-07T06:02:18.118104+00:00",
"file_format": "fastq",
"file_size": 10627718369,
"href": "/sequence-files/IGVFFI0075MOVB/@@download/IGVFFI0075MOVB.fastq.gz",
"md5sum": "d940ce954a0ef71bd8d1a97aa4da8d2f",
"s3_uri": "s3://igvf-files/2023/10/07/25af3e1d-a0cf-418b-91e2-83bfe8385a76/IGVFFI0075MOVB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_005/nova2/igvf_005_B13_D_nova_N2_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI0422MEXH/",
"accession": "IGVFFI0422MEXH",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T22:40:30.102524+00:00",
"file_format": "yaml",
"file_size": 1354,
"href": "/configuration-files/IGVFFI0422MEXH/@@download/IGVFFI0422MEXH.yaml.gz",
"md5sum": "1cd3a21017e61987939e4793a5ec512f",
"s3_uri": "s3://igvf-files/2024/09/17/277148f6-3735-4021-9c16-b0cb10973edf/IGVFFI0422MEXH.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI0892WDEG/",
"accession": "IGVFFI0892WDEG",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T22:40:37.373794+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI0892WDEG/@@download/IGVFFI0892WDEG.yaml.gz",
"md5sum": "b4783da0e7aae52aa0b1a6c9da14a877",
"s3_uri": "s3://igvf-files/2024/09/17/6fb46d6a-ddb6-4eed-abf8-5b5a94ecafc5/IGVFFI0892WDEG.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI3893ILQH/",
"accession": "IGVFFI3893ILQH",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T22:40:31.326679+00:00",
"file_format": "yaml",
"file_size": 1349,
"href": "/configuration-files/IGVFFI3893ILQH/@@download/IGVFFI3893ILQH.yaml.gz",
"md5sum": "bb8dbe61db89fafb3cfb239e7b286fb5",
"s3_uri": "s3://igvf-files/2024/09/17/45a6f21c-1636-4b6c-bb8c-28e7a50def77/IGVFFI3893ILQH.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2706JYBJ/",
"accession": "IGVFFI2706JYBJ",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T22:40:32.492162+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI2706JYBJ/@@download/IGVFFI2706JYBJ.yaml.gz",
"md5sum": "fe2ffaa90f76ec903cd739ab5b73c7d4",
"s3_uri": "s3://igvf-files/2024/09/17/251cff69-8245-4f87-adbc-9f77dd1526c2/IGVFFI2706JYBJ.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI8591VMHX/",
"accession": "IGVFFI8591VMHX",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T22:40:36.198476+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI8591VMHX/@@download/IGVFFI8591VMHX.yaml.gz",
"md5sum": "f2b76d94b9ec94d3fdb190e20e90e7be",
"s3_uri": "s3://igvf-files/2024/09/17/69aa1b63-d41c-43a4-9560-ab8c72347a56/IGVFFI8591VMHX.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI1871YVKI/",
"accession": "IGVFFI1871YVKI",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T22:40:38.583409+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI1871YVKI/@@download/IGVFFI1871YVKI.yaml.gz",
"md5sum": "a8488afb45121283f1495c50e639ce16",
"s3_uri": "s3://igvf-files/2024/09/17/2841db40-3ab1-4818-8dc9-8c3b4cb09c7d/IGVFFI1871YVKI.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2326CVXX/",
"accession": "IGVFFI2326CVXX",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T22:40:35.021247+00:00",
"file_format": "yaml",
"file_size": 1353,
"href": "/configuration-files/IGVFFI2326CVXX/@@download/IGVFFI2326CVXX.yaml.gz",
"md5sum": "cea203ab819017a949a01a739bab1af0",
"s3_uri": "s3://igvf-files/2024/09/17/c3135bb1-f2df-4ad0-a18b-76d1820b36ca/IGVFFI2326CVXX.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2953XCFI/",
"accession": "IGVFFI2953XCFI",
"content_type": "seqspec",
"creation_timestamp": "2024-09-17T22:40:33.818150+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI2953XCFI/@@download/IGVFFI2953XCFI.yaml.gz",
"md5sum": "52a2369ed83694f888fc9be15547367d",
"s3_uri": "s3://igvf-files/2024/09/17/d12e7cc1-28b4-4913-bb90-e7da77f7a5e6/IGVFFI2953XCFI.yaml.gz",
"status": "released",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS7679CRNV/"
],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
"onlist_files": [
"/tabular-files/IGVFFI2591OFQO/",
"/tabular-files/IGVFFI1138MCVX/"
],
"onlist_method": "multi",
"preferred_assay_title": "Parse SPLiT-seq",
"protocols": [
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-n92ldm8b8l5b/v2",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-kxygx396zg8j/v2",
"https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
"https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
],
"release_timestamp": "2025-04-18T23:31:32.913839+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM3610EBLH/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM3610EBLH",
"aliases": [
"ali-mortazavi:subpool_005_67L"
],
"cellular_sub_pool": "005_67L",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000007/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "pituitary gland",
"term_name": "pituitary gland"
},
{
"@id": "/sample-terms/UBERON_0001898/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "hypothalamus",
"term_name": "hypothalamus"
},
{
"@id": "/sample-terms/UBERON_0002107/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "liver",
"term_name": "liver"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"schema_version": "26",
"sequencing_library_types": [
"mRNA enriched"
],
"status": "released",
"strand_specificity": "5 prime to 3 prime",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_files_timestamp": "2023-10-07T05:28:19.416827+00:00",
"summary": "Parse SPLiT-seq",
"uuid": "3726ab3e-3cae-44f6-94f9-b5182d6c6369"
}