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INDEXED
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MeasurementSet
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IGVFDS6819TPGN
IGVFDS6819TPGN
released
Json view
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
Mus musculus CAST/EiJ (male, 10 weeks) left cerebral cortex tissue
Protocols
https://www.protocols.io/view/isolation-of-nuclei-from-frozen-tissue-for-atac-se-ewov1nm2kgr2/v1
Aliases
ansuman-satpathy:snATAC-seq_mouse_bridge_101
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0305RRIM
fastq
reads
R1
1
Read 1
IGVFFI6533YMOZ
Illumina NovaSeq 6000
HV7LKDSX5
1
18 GB
Ansuman Satpathy, Stanford
validated
IGVFFI0814SBBP
fastq
reads
R2
1
Barcode index
IGVFFI6533YMOZ
Illumina NovaSeq 6000
HV7LKDSX5
1
6.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3352IPEU
fastq
reads
I1
1
IGVFFI6533YMOZ
Illumina NovaSeq 6000
HV7LKDSX5
1
2.5 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8084WUEK
fastq
reads
R3
1
Read 2
IGVFFI6533YMOZ
Illumina NovaSeq 6000
HV7LKDSX5
1
19 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM2776DDRF
Tissue
left cerebral cortex
Mus musculus CAST/EiJ (male, 10 weeks) left cerebral cortex tissue
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO2440QVYB
ansuman-satpathy:101_CASTJ_10M
male
Mus musculus
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS9624INNM
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
ansuman-satpathy:snRNA-seq_mouse_bridge_101
Ansuman Satpathy, Stanford