{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS6768LDRK/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS6768LDRK",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS6768LDRK](/measurement-sets/IGVFDS6768LDRK/) has sequence file(s) [IGVFFI5161MBUT](/sequence-files/IGVFFI5161MBUT/), [IGVFFI2569AIPJ](/sequence-files/IGVFFI2569AIPJ/), [IGVFFI8668BCMM](/sequence-files/IGVFFI8668BCMM/), [IGVFFI4324WSFY](/sequence-files/IGVFFI4324WSFY/), [IGVFFI7702HEAK](/sequence-files/IGVFFI7702HEAK/), [IGVFFI6216JVTL](/sequence-files/IGVFFI6216JVTL/), [IGVFFI2175GFVB](/sequence-files/IGVFFI2175GFVB/), [IGVFFI2968JFMM](/sequence-files/IGVFFI2968JFMM/), [IGVFFI6475HETB](/sequence-files/IGVFFI6475HETB/), [IGVFFI0949HAPT](/sequence-files/IGVFFI0949HAPT/), [IGVFFI6067GIQV](/sequence-files/IGVFFI6067GIQV/), [IGVFFI9772BDMD](/sequence-files/IGVFFI9772BDMD/), [IGVFFI3513SKAS](/sequence-files/IGVFFI3513SKAS/), [IGVFFI5739SGYP](/sequence-files/IGVFFI5739SGYP/), [IGVFFI2023NTXU](/sequence-files/IGVFFI2023NTXU/), [IGVFFI6089SKPH](/sequence-files/IGVFFI6089SKPH/), [IGVFFI2439JNME](/sequence-files/IGVFFI2439JNME/), [IGVFFI0270BDVB](/sequence-files/IGVFFI0270BDVB/), [IGVFFI5581PWZV](/sequence-files/IGVFFI5581PWZV/), [IGVFFI2470MVPV](/sequence-files/IGVFFI2470MVPV/), [IGVFFI0220JBJO](/sequence-files/IGVFFI0220JBJO/), [IGVFFI7510NZPW](/sequence-files/IGVFFI7510NZPW/), [IGVFFI0429JNTE](/sequence-files/IGVFFI0429JNTE/), [IGVFFI5761KHYO](/sequence-files/IGVFFI5761KHYO/), [IGVFFI6021JKLT](/sequence-files/IGVFFI6021JKLT/), [IGVFFI9009WMVP](/sequence-files/IGVFFI9009WMVP/), [IGVFFI9790LEPY](/sequence-files/IGVFFI9790LEPY/), [IGVFFI5172AQMO](/sequence-files/IGVFFI5172AQMO/), [IGVFFI3477UIAH](/sequence-files/IGVFFI3477UIAH/), [IGVFFI3654AKSK](/sequence-files/IGVFFI3654AKSK/), [IGVFFI7194PHHL](/sequence-files/IGVFFI7194PHHL/), [IGVFFI6362DMSE](/sequence-files/IGVFFI6362DMSE/), [IGVFFI9920XNZU](/sequence-files/IGVFFI9920XNZU/), [IGVFFI8949NYBU](/sequence-files/IGVFFI8949NYBU/), [IGVFFI7680GKQP](/sequence-files/IGVFFI7680GKQP/), [IGVFFI5199ZVVN](/sequence-files/IGVFFI5199ZVVN/), [IGVFFI4606MOSJ](/sequence-files/IGVFFI4606MOSJ/), [IGVFFI5072IHFP](/sequence-files/IGVFFI5072IHFP/), [IGVFFI6209BRDQ](/sequence-files/IGVFFI6209BRDQ/), [IGVFFI6529EIQZ](/sequence-files/IGVFFI6529EIQZ/), [IGVFFI8258LOAJ](/sequence-files/IGVFFI8258LOAJ/), [IGVFFI4141MXJB](/sequence-files/IGVFFI4141MXJB/), [IGVFFI8416CUBG](/sequence-files/IGVFFI8416CUBG/), [IGVFFI6992LSQB](/sequence-files/IGVFFI6992LSQB/), [IGVFFI3190QKRC](/sequence-files/IGVFFI3190QKRC/), [IGVFFI8125CIQA](/sequence-files/IGVFFI8125CIQA/), [IGVFFI8304JGUE](/sequence-files/IGVFFI8304JGUE/), [IGVFFI5308VLAJ](/sequence-files/IGVFFI5308VLAJ/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS6768LDRK/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS6768LDRK](/measurement-sets/IGVFDS6768LDRK/) has sequence file(s): [IGVFFI5161MBUT](/sequence-files/IGVFFI5161MBUT/), [IGVFFI2569AIPJ](/sequence-files/IGVFFI2569AIPJ/), [IGVFFI8668BCMM](/sequence-files/IGVFFI8668BCMM/), [IGVFFI4324WSFY](/sequence-files/IGVFFI4324WSFY/), [IGVFFI7702HEAK](/sequence-files/IGVFFI7702HEAK/), [IGVFFI6216JVTL](/sequence-files/IGVFFI6216JVTL/), [IGVFFI2175GFVB](/sequence-files/IGVFFI2175GFVB/), [IGVFFI2968JFMM](/sequence-files/IGVFFI2968JFMM/), [IGVFFI6475HETB](/sequence-files/IGVFFI6475HETB/), [IGVFFI0949HAPT](/sequence-files/IGVFFI0949HAPT/), [IGVFFI6067GIQV](/sequence-files/IGVFFI6067GIQV/), [IGVFFI9772BDMD](/sequence-files/IGVFFI9772BDMD/), [IGVFFI3513SKAS](/sequence-files/IGVFFI3513SKAS/), [IGVFFI5739SGYP](/sequence-files/IGVFFI5739SGYP/), [IGVFFI2023NTXU](/sequence-files/IGVFFI2023NTXU/), [IGVFFI6089SKPH](/sequence-files/IGVFFI6089SKPH/), [IGVFFI2439JNME](/sequence-files/IGVFFI2439JNME/), [IGVFFI0270BDVB](/sequence-files/IGVFFI0270BDVB/), [IGVFFI5581PWZV](/sequence-files/IGVFFI5581PWZV/), [IGVFFI2470MVPV](/sequence-files/IGVFFI2470MVPV/), [IGVFFI0220JBJO](/sequence-files/IGVFFI0220JBJO/), [IGVFFI7510NZPW](/sequence-files/IGVFFI7510NZPW/), [IGVFFI0429JNTE](/sequence-files/IGVFFI0429JNTE/), [IGVFFI5761KHYO](/sequence-files/IGVFFI5761KHYO/), [IGVFFI6021JKLT](/sequence-files/IGVFFI6021JKLT/), [IGVFFI9009WMVP](/sequence-files/IGVFFI9009WMVP/), [IGVFFI9790LEPY](/sequence-files/IGVFFI9790LEPY/), [IGVFFI5172AQMO](/sequence-files/IGVFFI5172AQMO/), [IGVFFI3477UIAH](/sequence-files/IGVFFI3477UIAH/), [IGVFFI3654AKSK](/sequence-files/IGVFFI3654AKSK/), [IGVFFI7194PHHL](/sequence-files/IGVFFI7194PHHL/), [IGVFFI6362DMSE](/sequence-files/IGVFFI6362DMSE/), [IGVFFI9920XNZU](/sequence-files/IGVFFI9920XNZU/), [IGVFFI8949NYBU](/sequence-files/IGVFFI8949NYBU/), [IGVFFI7680GKQP](/sequence-files/IGVFFI7680GKQP/), [IGVFFI5199ZVVN](/sequence-files/IGVFFI5199ZVVN/), [IGVFFI4606MOSJ](/sequence-files/IGVFFI4606MOSJ/), [IGVFFI5072IHFP](/sequence-files/IGVFFI5072IHFP/), [IGVFFI6209BRDQ](/sequence-files/IGVFFI6209BRDQ/), [IGVFFI6529EIQZ](/sequence-files/IGVFFI6529EIQZ/), [IGVFFI8258LOAJ](/sequence-files/IGVFFI8258LOAJ/), [IGVFFI4141MXJB](/sequence-files/IGVFFI4141MXJB/), [IGVFFI8416CUBG](/sequence-files/IGVFFI8416CUBG/), [IGVFFI6992LSQB](/sequence-files/IGVFFI6992LSQB/), [IGVFFI3190QKRC](/sequence-files/IGVFFI3190QKRC/), [IGVFFI8125CIQA](/sequence-files/IGVFFI8125CIQA/), [IGVFFI8304JGUE](/sequence-files/IGVFFI8304JGUE/), [IGVFFI5308VLAJ](/sequence-files/IGVFFI5308VLAJ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS6768LDRK/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS6768LDRK](/measurement-sets/IGVFDS6768LDRK/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS6768LDRK/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS4103BJLT/",
"accession": "IGVFDS4103BJLT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-THP1-PE2_Exp4_NegControl_AmpliconSequencing"
],
"status": "preview"
}
],
"control_for": [],
"creation_timestamp": "2024-11-25T23:52:45.172452+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI5161MBUT/",
"accession": "IGVFFI5161MBUT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:50:34.015593+00:00",
"file_format": "fastq",
"file_size": 14194809,
"href": "/sequence-files/IGVFFI5161MBUT/@@download/IGVFFI5161MBUT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/3c47514f-14de-4f1b-888f-7ef0c1961894/IGVFFI5161MBUT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep9_S519_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2569AIPJ/",
"accession": "IGVFFI2569AIPJ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:44:47.340555+00:00",
"file_format": "fastq",
"file_size": 15545855,
"href": "/sequence-files/IGVFFI2569AIPJ/@@download/IGVFFI2569AIPJ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/5c867317-2842-473f-b9a0-a1c1f62641ea/IGVFFI2569AIPJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep4_S514_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8668BCMM/",
"accession": "IGVFFI8668BCMM",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:40:27.706790+00:00",
"file_format": "fastq",
"file_size": 15783123,
"href": "/sequence-files/IGVFFI8668BCMM/@@download/IGVFFI8668BCMM.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/89b8257d-8dae-471b-bd97-a05af88d5c4a/IGVFFI8668BCMM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep1_S511_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4324WSFY/",
"accession": "IGVFFI4324WSFY",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep2_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:42:11.491832+00:00",
"file_format": "fastq",
"file_size": 15584047,
"href": "/sequence-files/IGVFFI4324WSFY/@@download/IGVFFI4324WSFY.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/2150ab0f-fa7a-4145-b916-ce4f24aa62a4/IGVFFI4324WSFY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep2_S512_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7702HEAK/",
"accession": "IGVFFI7702HEAK",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep3_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:43:37.890166+00:00",
"file_format": "fastq",
"file_size": 16096531,
"href": "/sequence-files/IGVFFI7702HEAK/@@download/IGVFFI7702HEAK.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/379f1d74-1730-450f-bdbc-453e62b8b19c/IGVFFI7702HEAK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep3_S513_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6216JVTL/",
"accession": "IGVFFI6216JVTL",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:45:56.523782+00:00",
"file_format": "fastq",
"file_size": 14591802,
"href": "/sequence-files/IGVFFI6216JVTL/@@download/IGVFFI6216JVTL.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/48abe1d2-d409-40be-acb7-568f3260928a/IGVFFI6216JVTL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep5_S515_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2175GFVB/",
"accession": "IGVFFI2175GFVB",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:49:23.731993+00:00",
"file_format": "fastq",
"file_size": 15627717,
"href": "/sequence-files/IGVFFI2175GFVB/@@download/IGVFFI2175GFVB.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/c35d5066-4985-4afa-9e0e-d31c746c32fb/IGVFFI2175GFVB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep8_S518_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2968JFMM/",
"accession": "IGVFFI2968JFMM",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep11_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:52:53.192391+00:00",
"file_format": "fastq",
"file_size": 13814916,
"href": "/sequence-files/IGVFFI2968JFMM/@@download/IGVFFI2968JFMM.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/fe297bb7-d33f-4055-9b8a-1f932ac5195f/IGVFFI2968JFMM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep11_S521_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6475HETB/",
"accession": "IGVFFI6475HETB",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:47:04.544085+00:00",
"file_format": "fastq",
"file_size": 16530770,
"href": "/sequence-files/IGVFFI6475HETB/@@download/IGVFFI6475HETB.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/8fe589e0-cc9c-4fae-a2ed-74132eb28bee/IGVFFI6475HETB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep6_S516_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0949HAPT/",
"accession": "IGVFFI0949HAPT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:48:15.620610+00:00",
"file_format": "fastq",
"file_size": 15056521,
"href": "/sequence-files/IGVFFI0949HAPT/@@download/IGVFFI0949HAPT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/0daab9e5-5c3a-4563-8cad-908b38c1f97b/IGVFFI0949HAPT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep7_S517_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6067GIQV/",
"accession": "IGVFFI6067GIQV",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:51:41.965073+00:00",
"file_format": "fastq",
"file_size": 13920604,
"href": "/sequence-files/IGVFFI6067GIQV/@@download/IGVFFI6067GIQV.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/094f0a3f-c5eb-40cb-89a4-2c74caefb0f8/IGVFFI6067GIQV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep10_S520_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9772BDMD/",
"accession": "IGVFFI9772BDMD",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep12_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:54:00.959898+00:00",
"file_format": "fastq",
"file_size": 14355393,
"href": "/sequence-files/IGVFFI9772BDMD/@@download/IGVFFI9772BDMD.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/2b80d722-9380-4989-afdb-29d65e919ceb/IGVFFI9772BDMD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep12_S522_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3513SKAS/",
"accession": "IGVFFI3513SKAS",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep1_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:53:17.095891+00:00",
"file_format": "fastq",
"file_size": 18600971,
"href": "/sequence-files/IGVFFI3513SKAS/@@download/IGVFFI3513SKAS.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/a64e5921-d909-4b35-9149-3138d3ac5ad5/IGVFFI3513SKAS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep1_S511_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5739SGYP/",
"accession": "IGVFFI5739SGYP",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep2_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:55:55.217748+00:00",
"file_format": "fastq",
"file_size": 18213415,
"href": "/sequence-files/IGVFFI5739SGYP/@@download/IGVFFI5739SGYP.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/87783f66-29db-480c-a23f-7ca90bd47bf3/IGVFFI5739SGYP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep2_S512_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2023NTXU/",
"accession": "IGVFFI2023NTXU",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep9_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:12:32.208453+00:00",
"file_format": "fastq",
"file_size": 16640524,
"href": "/sequence-files/IGVFFI2023NTXU/@@download/IGVFFI2023NTXU.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/f0d81b62-6e4f-4f8b-af89-c8d7f86ee013/IGVFFI2023NTXU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep9_S519_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6089SKPH/",
"accession": "IGVFFI6089SKPH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep12_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:19:35.255224+00:00",
"file_format": "fastq",
"file_size": 16620900,
"href": "/sequence-files/IGVFFI6089SKPH/@@download/IGVFFI6089SKPH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/9b2797c6-f1d8-4a38-9e14-10d1496b9bb7/IGVFFI6089SKPH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep12_S522_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2439JNME/",
"accession": "IGVFFI2439JNME",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:07:53.088448+00:00",
"file_format": "fastq",
"file_size": 17656450,
"href": "/sequence-files/IGVFFI2439JNME/@@download/IGVFFI2439JNME.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/bd0a2cad-6a86-468f-bfc2-d27eda253af7/IGVFFI2439JNME.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep7_S517_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0270BDVB/",
"accession": "IGVFFI0270BDVB",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:58:35.870656+00:00",
"file_format": "fastq",
"file_size": 18650363,
"href": "/sequence-files/IGVFFI0270BDVB/@@download/IGVFFI0270BDVB.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/188a856e-a78c-49a9-8956-3abaa7b16b69/IGVFFI0270BDVB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep3_S513_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5581PWZV/",
"accession": "IGVFFI5581PWZV",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep5_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:03:17.616033+00:00",
"file_format": "fastq",
"file_size": 17003805,
"href": "/sequence-files/IGVFFI5581PWZV/@@download/IGVFFI5581PWZV.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/5bbcc18c-75b6-4b4c-bc35-16f0203bf0db/IGVFFI5581PWZV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep5_S515_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2470MVPV/",
"accession": "IGVFFI2470MVPV",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep6_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:05:29.577784+00:00",
"file_format": "fastq",
"file_size": 19100748,
"href": "/sequence-files/IGVFFI2470MVPV/@@download/IGVFFI2470MVPV.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/8ac297fc-f24f-44f4-912c-030665d84f45/IGVFFI2470MVPV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep6_S516_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0220JBJO/",
"accession": "IGVFFI0220JBJO",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:14:59.069450+00:00",
"file_format": "fastq",
"file_size": 16273551,
"href": "/sequence-files/IGVFFI0220JBJO/@@download/IGVFFI0220JBJO.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1689134f-bdca-4bff-9fd1-927db36ca729/IGVFFI0220JBJO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep10_S520_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7510NZPW/",
"accession": "IGVFFI7510NZPW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:17:17.995631+00:00",
"file_format": "fastq",
"file_size": 16106322,
"href": "/sequence-files/IGVFFI7510NZPW/@@download/IGVFFI7510NZPW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/821c6d00-f695-4970-9936-e76670758247/IGVFFI7510NZPW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep11_S521_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0429JNTE/",
"accession": "IGVFFI0429JNTE",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:01:03.733037+00:00",
"file_format": "fastq",
"file_size": 18101195,
"href": "/sequence-files/IGVFFI0429JNTE/@@download/IGVFFI0429JNTE.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/83d45ee9-7ab8-4d10-bc9d-accbc785b2d8/IGVFFI0429JNTE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep4_S514_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5761KHYO/",
"accession": "IGVFFI5761KHYO",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:10:14.745943+00:00",
"file_format": "fastq",
"file_size": 18120055,
"href": "/sequence-files/IGVFFI5761KHYO/@@download/IGVFFI5761KHYO.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/2c6a7ccb-ea1a-4f69-8746-37d2058dd9f3/IGVFFI5761KHYO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep8_S518_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6021JKLT/",
"accession": "IGVFFI6021JKLT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:45:02.153062+00:00",
"file_format": "fastq",
"file_size": 7648236,
"href": "/sequence-files/IGVFFI6021JKLT/@@download/IGVFFI6021JKLT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/db08cf52-0caa-4d2d-9b48-40eea446a75a/IGVFFI6021JKLT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep1_S511_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9009WMVP/",
"accession": "IGVFFI9009WMVP",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep5_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:55:17.904648+00:00",
"file_format": "fastq",
"file_size": 6752797,
"href": "/sequence-files/IGVFFI9009WMVP/@@download/IGVFFI9009WMVP.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/aed40de6-63c8-4ac1-a012-e72bb9b4f49d/IGVFFI9009WMVP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep5_S515_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9790LEPY/",
"accession": "IGVFFI9790LEPY",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep4_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:52:55.651230+00:00",
"file_format": "fastq",
"file_size": 6383296,
"href": "/sequence-files/IGVFFI9790LEPY/@@download/IGVFFI9790LEPY.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/2656ccba-8031-4d80-a4bf-cd508c7245e0/IGVFFI9790LEPY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep4_S514_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5172AQMO/",
"accession": "IGVFFI5172AQMO",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep9_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:04:40.221780+00:00",
"file_format": "fastq",
"file_size": 5933840,
"href": "/sequence-files/IGVFFI5172AQMO/@@download/IGVFFI5172AQMO.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/2cfe1469-082e-4ad8-9d82-2f6c221c8db0/IGVFFI5172AQMO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep9_S519_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3477UIAH/",
"accession": "IGVFFI3477UIAH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:07:03.598516+00:00",
"file_format": "fastq",
"file_size": 6212182,
"href": "/sequence-files/IGVFFI3477UIAH/@@download/IGVFFI3477UIAH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/3d670ce7-deb0-48dc-80e3-4ee89ff0b70a/IGVFFI3477UIAH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep10_S520_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3654AKSK/",
"accession": "IGVFFI3654AKSK",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep8_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:02:22.682399+00:00",
"file_format": "fastq",
"file_size": 7016030,
"href": "/sequence-files/IGVFFI3654AKSK/@@download/IGVFFI3654AKSK.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/32f9836e-77e8-45cc-b1b8-e99054120cbb/IGVFFI3654AKSK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep8_S518_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7194PHHL/",
"accession": "IGVFFI7194PHHL",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:59:55.562039+00:00",
"file_format": "fastq",
"file_size": 6740189,
"href": "/sequence-files/IGVFFI7194PHHL/@@download/IGVFFI7194PHHL.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/7b61f47d-717b-4d3c-b6b6-edb930b637b2/IGVFFI7194PHHL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep7_S517_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6362DMSE/",
"accession": "IGVFFI6362DMSE",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep3_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:50:33.803749+00:00",
"file_format": "fastq",
"file_size": 6497247,
"href": "/sequence-files/IGVFFI6362DMSE/@@download/IGVFFI6362DMSE.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/0c722362-3d85-45a1-87d4-c73463ba72f8/IGVFFI6362DMSE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep3_S513_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9920XNZU/",
"accession": "IGVFFI9920XNZU",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:57:35.629132+00:00",
"file_format": "fastq",
"file_size": 7931398,
"href": "/sequence-files/IGVFFI9920XNZU/@@download/IGVFFI9920XNZU.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d340462f-4d03-46ca-821a-c52d37e3ad82/IGVFFI9920XNZU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep6_S516_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8949NYBU/",
"accession": "IGVFFI8949NYBU",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep11_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:09:26.206526+00:00",
"file_format": "fastq",
"file_size": 6575360,
"href": "/sequence-files/IGVFFI8949NYBU/@@download/IGVFFI8949NYBU.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/857a13e9-6678-4db7-9fe0-032a705daae0/IGVFFI8949NYBU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep11_S521_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7680GKQP/",
"accession": "IGVFFI7680GKQP",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep12_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:11:48.038617+00:00",
"file_format": "fastq",
"file_size": 5920709,
"href": "/sequence-files/IGVFFI7680GKQP/@@download/IGVFFI7680GKQP.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/c6aae066-eeca-4253-8894-318c0f85d9bc/IGVFFI7680GKQP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep12_S522_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5199ZVVN/",
"accession": "IGVFFI5199ZVVN",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:47:41.282693+00:00",
"file_format": "fastq",
"file_size": 7094482,
"href": "/sequence-files/IGVFFI5199ZVVN/@@download/IGVFFI5199ZVVN.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/c39ef404-2e3f-471e-b158-e7f2630fab2e/IGVFFI5199ZVVN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep2_S512_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4606MOSJ/",
"accession": "IGVFFI4606MOSJ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep12_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:08:58.358463+00:00",
"file_format": "fastq",
"file_size": 6564390,
"href": "/sequence-files/IGVFFI4606MOSJ/@@download/IGVFFI4606MOSJ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/64d8afc0-7549-48fb-a9ef-0b8fcffb0fe0/IGVFFI4606MOSJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep12_S522_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5072IHFP/",
"accession": "IGVFFI5072IHFP",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep7_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:56:59.822862+00:00",
"file_format": "fastq",
"file_size": 7357877,
"href": "/sequence-files/IGVFFI5072IHFP/@@download/IGVFFI5072IHFP.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/f3090801-e0aa-455d-95ef-3f1a6d8253d0/IGVFFI5072IHFP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep7_S517_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6209BRDQ/",
"accession": "IGVFFI6209BRDQ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep1_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:42:22.773741+00:00",
"file_format": "fastq",
"file_size": 7277599,
"href": "/sequence-files/IGVFFI6209BRDQ/@@download/IGVFFI6209BRDQ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ff60accd-0ae9-4e2e-9558-efa51729af81/IGVFFI6209BRDQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep1_S511_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6529EIQZ/",
"accession": "IGVFFI6529EIQZ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep4_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:50:09.953684+00:00",
"file_format": "fastq",
"file_size": 7424518,
"href": "/sequence-files/IGVFFI6529EIQZ/@@download/IGVFFI6529EIQZ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1a3d3198-5e75-4251-801d-7f102c62d793/IGVFFI6529EIQZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep4_S514_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8258LOAJ/",
"accession": "IGVFFI8258LOAJ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep5_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:52:21.668103+00:00",
"file_format": "fastq",
"file_size": 6855397,
"href": "/sequence-files/IGVFFI8258LOAJ/@@download/IGVFFI8258LOAJ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/97a004fe-97fd-4720-8bcc-0546597e648e/IGVFFI8258LOAJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep5_S515_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4141MXJB/",
"accession": "IGVFFI4141MXJB",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:45:01.038805+00:00",
"file_format": "fastq",
"file_size": 7123111,
"href": "/sequence-files/IGVFFI4141MXJB/@@download/IGVFFI4141MXJB.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/b10d436d-4890-4859-b49a-4a16f2c2f250/IGVFFI4141MXJB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep2_S512_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8416CUBG/",
"accession": "IGVFFI8416CUBG",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep6_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:54:38.075354+00:00",
"file_format": "fastq",
"file_size": 7650016,
"href": "/sequence-files/IGVFFI8416CUBG/@@download/IGVFFI8416CUBG.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/99fb9b19-9e86-4e81-9361-f77f9343ac10/IGVFFI8416CUBG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep6_S516_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6992LSQB/",
"accession": "IGVFFI6992LSQB",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:59:23.933610+00:00",
"file_format": "fastq",
"file_size": 7336021,
"href": "/sequence-files/IGVFFI6992LSQB/@@download/IGVFFI6992LSQB.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/119a1bba-7539-40b8-803d-face9904bd04/IGVFFI6992LSQB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep8_S518_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3190QKRC/",
"accession": "IGVFFI3190QKRC",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep9_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:01:46.815955+00:00",
"file_format": "fastq",
"file_size": 6567679,
"href": "/sequence-files/IGVFFI3190QKRC/@@download/IGVFFI3190QKRC.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/dbad3010-33b5-476d-9dc2-092d8a8f0936/IGVFFI3190QKRC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep9_S519_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8125CIQA/",
"accession": "IGVFFI8125CIQA",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep3_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:47:45.644174+00:00",
"file_format": "fastq",
"file_size": 7378549,
"href": "/sequence-files/IGVFFI8125CIQA/@@download/IGVFFI8125CIQA.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ce1e9b93-59fe-40fa-bb01-714fbc318427/IGVFFI8125CIQA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep3_S513_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8304JGUE/",
"accession": "IGVFFI8304JGUE",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:04:11.118817+00:00",
"file_format": "fastq",
"file_size": 6449986,
"href": "/sequence-files/IGVFFI8304JGUE/@@download/IGVFFI8304JGUE.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/c2682780-22b0-4a3f-aa82-eb952060178c/IGVFFI8304JGUE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep10_S520_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5308VLAJ/",
"accession": "IGVFFI5308VLAJ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:06:30.766467+00:00",
"file_format": "fastq",
"file_size": 6596550,
"href": "/sequence-files/IGVFFI5308VLAJ/@@download/IGVFFI5308VLAJ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/c818a48f-f982-4abd-b7d3-7f4958d8510d/IGVFFI5308VLAJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep3-BinA-PCRrep11_S521_I2_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS4833ZRTZ/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM5228SJVO/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5228SJVO",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep3-BinA"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS4955GEYO/",
"accession": "IGVFDS4955GEYO",
"file_set_type": "guide library",
"status": "preview",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "preview",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "preview",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2024-11-26T06:40:27.706790+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "9653f754-dd7c-4d86-bf5d-f37fbe46a09a"
}