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INDEXED
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MeasurementSet
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IGVFDS6764PIJI
IGVFDS6764PIJI
released
Json view
File Set Type
experimental data
Summary
CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
Assay Term
in vitro CRISPR screen using single-cell RNA-seq
Sample Summaries
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)
Protocols
https://www.protocols.io/view/perturb-seq-characterizing-regulators-of-t-cell-fu-c5s9y6h6
https://www.protocols.io/view/crispra-tiling-screens-c5rfy53n
Aliases
charles-gersbach:cd8-tcells-perturb-seq-crispra-gex-rep1
Publications
Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1893OEIP
fastq
reads
R1
1
IGVFFI4202MHFC
Illumina NovaSeq 6000
2
8.3 GB
Charles Gersbach, Duke
validated
IGVFFI2514FKSS
fastq
reads
R1
1
IGVFFI3921CPXY
Illumina NovaSeq 6000
4
8.4 GB
Charles Gersbach, Duke
validated
IGVFFI3522PYTD
fastq
reads
R2
1
IGVFFI4202MHFC
Illumina NovaSeq 6000
2
21 GB
Charles Gersbach, Duke
validated
IGVFFI5126PDVA
fastq
reads
R2
1
IGVFFI3921CPXY
Illumina NovaSeq 6000
4
21 GB
Charles Gersbach, Duke
validated
IGVFFI6949VPVV
fastq
reads
R2
1
IGVFFI2121DSKN
Illumina NovaSeq 6000
1
21 GB
Charles Gersbach, Duke
validated
IGVFFI7715PXEN
fastq
reads
R1
1
IGVFFI4327JRXJ
Illumina NovaSeq 6000
3
8.4 GB
Charles Gersbach, Duke
validated
IGVFFI7791HIRG
fastq
reads
R1
1
IGVFFI2121DSKN
Illumina NovaSeq 6000
1
8.4 GB
Charles Gersbach, Duke
validated
IGVFFI9683XENS
fastq
reads
R2
1
IGVFFI4327JRXJ
Illumina NovaSeq 6000
3
21 GB
Charles Gersbach, Duke
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM8036VPRU
PrimaryCell
CD8-positive, alpha-beta memory T cell
IGVFDS0821YMMV
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO7605NZFO
charles-gersbach:cd8-tcells-donor-6
unspecified
Homo sapiens
Associated Construct Library Sets
1 item
Accession
Summary
Library Design Files
IGVFDS0821YMMV
guide (sgRNA) library targeting transcription start sites in 24 genes
IGVFFI1405WMSH
IGVFFI2489BLJI
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5239SBBT
AnalysisSet
activation Perturb-seq: differential gene expression quantifications, filtered feature barcode matrix
charles-gersbach:cd8-tcells-analysis-set-perturb-seq-crispra
Charles Gersbach, Duke
Auxiliary Datasets
1 item
Accession
Type
Summary
Files
Aliases
Lab
IGVFDS9108NLTS
AuxiliarySet
gRNA sequencing for CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
IGVFFI9294QFQU
,
IGVFFI5265TJLC
,
IGVFFI3307YHIY
,
IGVFFI8799MGVV
,
IGVFFI2004LGCX
,
IGVFFI9768TMWP
,
IGVFFI3564HSSU
,
IGVFFI9845KVUX
charles-gersbach:cd8-tcells-perturb-seq-crispra-grna-rep1
Charles Gersbach, Duke
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke