{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS6761PEJX/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS6761PEJX",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"assay_slims": [
"CRISPR screens"
],
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM8901HJRO](/in-vitro-systems/IGVFSM8901HJRO/) has in progress subobject construct library set [IGVFDS6982DESN](/construct-library-sets/IGVFDS6982DESN/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM8901HJRO/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM8901HJRO](/in-vitro-systems/IGVFSM8901HJRO/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM8901HJRO/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS6761PEJX](/measurement-sets/IGVFDS6761PEJX/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS6761PEJX/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS6761PEJX](/measurement-sets/IGVFDS6761PEJX/) has sequence file(s) [IGVFFI6601JEKP](/sequence-files/IGVFFI6601JEKP/), [IGVFFI5518ROJI](/sequence-files/IGVFFI5518ROJI/), [IGVFFI6029DDWZ](/sequence-files/IGVFFI6029DDWZ/), [IGVFFI7872VAHJ](/sequence-files/IGVFFI7872VAHJ/), [IGVFFI1743DYUF](/sequence-files/IGVFFI1743DYUF/), [IGVFFI2139CBKN](/sequence-files/IGVFFI2139CBKN/), [IGVFFI4405EQEJ](/sequence-files/IGVFFI4405EQEJ/), [IGVFFI1457MHPI](/sequence-files/IGVFFI1457MHPI/), [IGVFFI0535KATF](/sequence-files/IGVFFI0535KATF/), [IGVFFI6148FVCP](/sequence-files/IGVFFI6148FVCP/), [IGVFFI7150FMCK](/sequence-files/IGVFFI7150FMCK/), [IGVFFI7626HTCH](/sequence-files/IGVFFI7626HTCH/), [IGVFFI9737LYQI](/sequence-files/IGVFFI9737LYQI/), [IGVFFI8367LJPF](/sequence-files/IGVFFI8367LJPF/), [IGVFFI3748PUHZ](/sequence-files/IGVFFI3748PUHZ/), [IGVFFI6382TDKO](/sequence-files/IGVFFI6382TDKO/), [IGVFFI5647THQB](/sequence-files/IGVFFI5647THQB/), [IGVFFI1177WAGF](/sequence-files/IGVFFI1177WAGF/), [IGVFFI6499XVYU](/sequence-files/IGVFFI6499XVYU/), [IGVFFI3919RUKZ](/sequence-files/IGVFFI3919RUKZ/), [IGVFFI7655UVBA](/sequence-files/IGVFFI7655UVBA/), [IGVFFI6205NMRV](/sequence-files/IGVFFI6205NMRV/), [IGVFFI9309XYJY](/sequence-files/IGVFFI9309XYJY/), [IGVFFI7939DHUP](/sequence-files/IGVFFI7939DHUP/), [IGVFFI0693ACZE](/sequence-files/IGVFFI0693ACZE/), [IGVFFI0167DNDM](/sequence-files/IGVFFI0167DNDM/), [IGVFFI9941OBET](/sequence-files/IGVFFI9941OBET/), [IGVFFI2512OOCN](/sequence-files/IGVFFI2512OOCN/), [IGVFFI0611WYEU](/sequence-files/IGVFFI0611WYEU/), [IGVFFI2939DOZQ](/sequence-files/IGVFFI2939DOZQ/), [IGVFFI8979DCDR](/sequence-files/IGVFFI8979DCDR/), [IGVFFI2213DFCW](/sequence-files/IGVFFI2213DFCW/), [IGVFFI1618PTZA](/sequence-files/IGVFFI1618PTZA/), [IGVFFI1479BCAI](/sequence-files/IGVFFI1479BCAI/), [IGVFFI7158DPXM](/sequence-files/IGVFFI7158DPXM/), [IGVFFI0299BKSG](/sequence-files/IGVFFI0299BKSG/), [IGVFFI1448XSES](/sequence-files/IGVFFI1448XSES/), [IGVFFI7621LVTV](/sequence-files/IGVFFI7621LVTV/), [IGVFFI4806HPCX](/sequence-files/IGVFFI4806HPCX/), [IGVFFI3117SQOM](/sequence-files/IGVFFI3117SQOM/), [IGVFFI4410VWGU](/sequence-files/IGVFFI4410VWGU/), [IGVFFI9845UTCQ](/sequence-files/IGVFFI9845UTCQ/), [IGVFFI5606PIHM](/sequence-files/IGVFFI5606PIHM/), [IGVFFI8597TFDI](/sequence-files/IGVFFI8597TFDI/), [IGVFFI4035VZLU](/sequence-files/IGVFFI4035VZLU/), [IGVFFI5301MCKD](/sequence-files/IGVFFI5301MCKD/), [IGVFFI9035FHIA](/sequence-files/IGVFFI9035FHIA/), [IGVFFI2778UYBW](/sequence-files/IGVFFI2778UYBW/) which lack specification of a `sequencing_kit`. Sequence files in a file set associated wtih bulk data should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS6761PEJX/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS6761PEJX](/measurement-sets/IGVFDS6761PEJX/) has sequence file(s): [IGVFFI6601JEKP](/sequence-files/IGVFFI6601JEKP/), [IGVFFI5518ROJI](/sequence-files/IGVFFI5518ROJI/), [IGVFFI6029DDWZ](/sequence-files/IGVFFI6029DDWZ/), [IGVFFI7872VAHJ](/sequence-files/IGVFFI7872VAHJ/), [IGVFFI1743DYUF](/sequence-files/IGVFFI1743DYUF/), [IGVFFI2139CBKN](/sequence-files/IGVFFI2139CBKN/), [IGVFFI4405EQEJ](/sequence-files/IGVFFI4405EQEJ/), [IGVFFI1457MHPI](/sequence-files/IGVFFI1457MHPI/), [IGVFFI0535KATF](/sequence-files/IGVFFI0535KATF/), [IGVFFI6148FVCP](/sequence-files/IGVFFI6148FVCP/), [IGVFFI7150FMCK](/sequence-files/IGVFFI7150FMCK/), [IGVFFI7626HTCH](/sequence-files/IGVFFI7626HTCH/), [IGVFFI9737LYQI](/sequence-files/IGVFFI9737LYQI/), [IGVFFI8367LJPF](/sequence-files/IGVFFI8367LJPF/), [IGVFFI3748PUHZ](/sequence-files/IGVFFI3748PUHZ/), [IGVFFI6382TDKO](/sequence-files/IGVFFI6382TDKO/), [IGVFFI5647THQB](/sequence-files/IGVFFI5647THQB/), [IGVFFI1177WAGF](/sequence-files/IGVFFI1177WAGF/), [IGVFFI6499XVYU](/sequence-files/IGVFFI6499XVYU/), [IGVFFI3919RUKZ](/sequence-files/IGVFFI3919RUKZ/), [IGVFFI7655UVBA](/sequence-files/IGVFFI7655UVBA/), [IGVFFI6205NMRV](/sequence-files/IGVFFI6205NMRV/), [IGVFFI9309XYJY](/sequence-files/IGVFFI9309XYJY/), [IGVFFI7939DHUP](/sequence-files/IGVFFI7939DHUP/), [IGVFFI0693ACZE](/sequence-files/IGVFFI0693ACZE/), [IGVFFI0167DNDM](/sequence-files/IGVFFI0167DNDM/), [IGVFFI9941OBET](/sequence-files/IGVFFI9941OBET/), [IGVFFI2512OOCN](/sequence-files/IGVFFI2512OOCN/), [IGVFFI0611WYEU](/sequence-files/IGVFFI0611WYEU/), [IGVFFI2939DOZQ](/sequence-files/IGVFFI2939DOZQ/), [IGVFFI8979DCDR](/sequence-files/IGVFFI8979DCDR/), [IGVFFI2213DFCW](/sequence-files/IGVFFI2213DFCW/), [IGVFFI1618PTZA](/sequence-files/IGVFFI1618PTZA/), [IGVFFI1479BCAI](/sequence-files/IGVFFI1479BCAI/), [IGVFFI7158DPXM](/sequence-files/IGVFFI7158DPXM/), [IGVFFI0299BKSG](/sequence-files/IGVFFI0299BKSG/), [IGVFFI1448XSES](/sequence-files/IGVFFI1448XSES/), [IGVFFI7621LVTV](/sequence-files/IGVFFI7621LVTV/), [IGVFFI4806HPCX](/sequence-files/IGVFFI4806HPCX/), [IGVFFI3117SQOM](/sequence-files/IGVFFI3117SQOM/), [IGVFFI4410VWGU](/sequence-files/IGVFFI4410VWGU/), [IGVFFI9845UTCQ](/sequence-files/IGVFFI9845UTCQ/), [IGVFFI5606PIHM](/sequence-files/IGVFFI5606PIHM/), [IGVFFI8597TFDI](/sequence-files/IGVFFI8597TFDI/), [IGVFFI4035VZLU](/sequence-files/IGVFFI4035VZLU/), [IGVFFI5301MCKD](/sequence-files/IGVFFI5301MCKD/), [IGVFFI9035FHIA](/sequence-files/IGVFFI9035FHIA/), [IGVFFI2778UYBW](/sequence-files/IGVFFI2778UYBW/) which do not have any `seqspecs`. Sequence files in a file set associated with bulk data are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS6761PEJX/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS6761PEJX](/measurement-sets/IGVFDS6761PEJX/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS6761PEJX/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS6982DESN/",
"accession": "IGVFDS6982DESN",
"file_set_type": "guide library",
"status": "in progress",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS5864UGFT/",
"accession": "IGVFDS5864UGFT",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-THP1-PE2_Exp2_NegControl_AmpliconSequencing"
],
"status": "released"
}
],
"control_for": [],
"creation_timestamp": "2023-11-30T22:49:43.735812+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI6601JEKP/",
"accession": "IGVFFI6601JEKP",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:44:00.596139+00:00",
"file_format": "fastq",
"file_size": 5851951,
"href": "/sequence-files/IGVFFI6601JEKP/@@download/IGVFFI6601JEKP.fastq.gz",
"md5sum": "85d36d2eec3c97f54fbe4de7c84d578f",
"s3_uri": "s3://igvf-files/2023/12/05/56c92928-dec0-423d-8a67-9ba0866431e6/IGVFFI6601JEKP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep6_S114_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5518ROJI/",
"accession": "IGVFFI5518ROJI",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep9_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:45:36.408482+00:00",
"file_format": "fastq",
"file_size": 1818523,
"href": "/sequence-files/IGVFFI5518ROJI/@@download/IGVFFI5518ROJI.fastq.gz",
"md5sum": "45656a6bc49d66178d8189ac9eb6c18f",
"s3_uri": "s3://igvf-files/2023/12/05/340e696e-581b-4750-bd95-436ff2811dd3/IGVFFI5518ROJI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep9_S117_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6029DDWZ/",
"accession": "IGVFFI6029DDWZ",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep1_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:39:29.384326+00:00",
"file_format": "fastq",
"file_size": 7598463,
"href": "/sequence-files/IGVFFI6029DDWZ/@@download/IGVFFI6029DDWZ.fastq.gz",
"md5sum": "6a712dc280f16d68f68aa841be536a6e",
"s3_uri": "s3://igvf-files/2023/12/05/6df9d060-d31b-4b1c-aa2d-8f33d0f6bfaa/IGVFFI6029DDWZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep1_S109_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7872VAHJ/",
"accession": "IGVFFI7872VAHJ",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:42:50.675250+00:00",
"file_format": "fastq",
"file_size": 6078499,
"href": "/sequence-files/IGVFFI7872VAHJ/@@download/IGVFFI7872VAHJ.fastq.gz",
"md5sum": "68a9ed448b1c0fa4d6360e8638884ec9",
"s3_uri": "s3://igvf-files/2023/12/05/f52ccbcb-401f-43d3-89bb-db4244547853/IGVFFI7872VAHJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep4_S112_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1743DYUF/",
"accession": "IGVFFI1743DYUF",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep11_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:40:30.620778+00:00",
"file_format": "fastq",
"file_size": 5343228,
"href": "/sequence-files/IGVFFI1743DYUF/@@download/IGVFFI1743DYUF.fastq.gz",
"md5sum": "3d830777954b587b5fcb37dd20b0679c",
"s3_uri": "s3://igvf-files/2023/12/05/22aca19b-8b47-4bd7-a88e-9fbc8d324fc0/IGVFFI1743DYUF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep11_S119_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2139CBKN/",
"accession": "IGVFFI2139CBKN",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep1_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:39:11.997726+00:00",
"file_format": "fastq",
"file_size": 1918283,
"href": "/sequence-files/IGVFFI2139CBKN/@@download/IGVFFI2139CBKN.fastq.gz",
"md5sum": "6f4b1a72751e0a289ae43429f6195d15",
"s3_uri": "s3://igvf-files/2023/12/05/b20505aa-f1dd-4a5e-b209-caf947adaf5f/IGVFFI2139CBKN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep1_S109_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4405EQEJ/",
"accession": "IGVFFI4405EQEJ",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:41:32.361518+00:00",
"file_format": "fastq",
"file_size": 1898148,
"href": "/sequence-files/IGVFFI4405EQEJ/@@download/IGVFFI4405EQEJ.fastq.gz",
"md5sum": "8a9a5513cdc4fa441be0c76911f83ae8",
"s3_uri": "s3://igvf-files/2023/12/05/3b8f226d-8f19-450e-bbb2-a95d8c176b4e/IGVFFI4405EQEJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep2_S110_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1457MHPI/",
"accession": "IGVFFI1457MHPI",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep5_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:43:08.457050+00:00",
"file_format": "fastq",
"file_size": 1709560,
"href": "/sequence-files/IGVFFI1457MHPI/@@download/IGVFFI1457MHPI.fastq.gz",
"md5sum": "bf6cbe182935be02db55300b4b9bde5f",
"s3_uri": "s3://igvf-files/2023/12/05/2df75583-ee1a-4277-8d57-470ddce14e27/IGVFFI1457MHPI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep5_S113_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0535KATF/",
"accession": "IGVFFI0535KATF",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep9_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:45:27.808758+00:00",
"file_format": "fastq",
"file_size": 1704565,
"href": "/sequence-files/IGVFFI0535KATF/@@download/IGVFFI0535KATF.fastq.gz",
"md5sum": "de3c8b83f1d0727fe59f24d1c61adaaa",
"s3_uri": "s3://igvf-files/2023/12/05/8b17b327-3df6-4d87-8e93-5b16abc01e00/IGVFFI0535KATF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep9_S117_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6148FVCP/",
"accession": "IGVFFI6148FVCP",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep12_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:40:56.119960+00:00",
"file_format": "fastq",
"file_size": 1693618,
"href": "/sequence-files/IGVFFI6148FVCP/@@download/IGVFFI6148FVCP.fastq.gz",
"md5sum": "faf3a3a09873cc6195816b748da33ac9",
"s3_uri": "s3://igvf-files/2023/12/05/8f92b15c-7cf8-4e83-94b7-58a5335e6137/IGVFFI6148FVCP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep12_S120_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7150FMCK/",
"accession": "IGVFFI7150FMCK",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep5_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:43:17.152416+00:00",
"file_format": "fastq",
"file_size": 1844855,
"href": "/sequence-files/IGVFFI7150FMCK/@@download/IGVFFI7150FMCK.fastq.gz",
"md5sum": "2a6e2f7265bdc0c3da82f0709eca53fd",
"s3_uri": "s3://igvf-files/2023/12/05/f3b57fc1-8953-4444-b819-fe1984275744/IGVFFI7150FMCK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep5_S113_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7626HTCH/",
"accession": "IGVFFI7626HTCH",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep9_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:45:53.903169+00:00",
"file_format": "fastq",
"file_size": 7140151,
"href": "/sequence-files/IGVFFI7626HTCH/@@download/IGVFFI7626HTCH.fastq.gz",
"md5sum": "7331e756571011a9d80a547bfe424b36",
"s3_uri": "s3://igvf-files/2023/12/05/dc8d4d07-42a7-465c-9b82-69a893137b5f/IGVFFI7626HTCH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep9_S117_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9737LYQI/",
"accession": "IGVFFI9737LYQI",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:39:55.491484+00:00",
"file_format": "fastq",
"file_size": 5572447,
"href": "/sequence-files/IGVFFI9737LYQI/@@download/IGVFFI9737LYQI.fastq.gz",
"md5sum": "ade3959433dfaa18b3df25eee16b15e0",
"s3_uri": "s3://igvf-files/2023/12/05/57765445-0890-4aeb-8dc6-0e88cc9f6f72/IGVFFI9737LYQI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep10_S118_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8367LJPF/",
"accession": "IGVFFI8367LJPF",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:45:01.413724+00:00",
"file_format": "fastq",
"file_size": 1835782,
"href": "/sequence-files/IGVFFI8367LJPF/@@download/IGVFFI8367LJPF.fastq.gz",
"md5sum": "a10a75214c92acbf2c7564f3e9ec94ad",
"s3_uri": "s3://igvf-files/2023/12/05/84809283-ddf3-46da-82aa-28d8f0629810/IGVFFI8367LJPF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep8_S116_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3748PUHZ/",
"accession": "IGVFFI3748PUHZ",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:40:04.423063+00:00",
"file_format": "fastq",
"file_size": 6939208,
"href": "/sequence-files/IGVFFI3748PUHZ/@@download/IGVFFI3748PUHZ.fastq.gz",
"md5sum": "73ed3c801837b45f430d69d0dc13e367",
"s3_uri": "s3://igvf-files/2023/12/05/563ea827-5c1e-4292-8309-3808b9907d75/IGVFFI3748PUHZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep10_S118_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6382TDKO/",
"accession": "IGVFFI6382TDKO",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep6_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:43:51.914108+00:00",
"file_format": "fastq",
"file_size": 1856833,
"href": "/sequence-files/IGVFFI6382TDKO/@@download/IGVFFI6382TDKO.fastq.gz",
"md5sum": "8265a082c4e3e14c31fab407b35b9b17",
"s3_uri": "s3://igvf-files/2023/12/05/f2a58502-69f9-428b-ac2e-bf0c8e0b6a01/IGVFFI6382TDKO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep6_S114_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5647THQB/",
"accession": "IGVFFI5647THQB",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep7_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:44:26.921584+00:00",
"file_format": "fastq",
"file_size": 1871046,
"href": "/sequence-files/IGVFFI5647THQB/@@download/IGVFFI5647THQB.fastq.gz",
"md5sum": "3e26fe2ac7c7a537ffdd80a574807613",
"s3_uri": "s3://igvf-files/2023/12/05/3c79e4bb-8187-423e-afff-2737f084231c/IGVFFI5647THQB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep7_S115_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1177WAGF/",
"accession": "IGVFFI1177WAGF",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep11_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:40:13.140289+00:00",
"file_format": "fastq",
"file_size": 1658215,
"href": "/sequence-files/IGVFFI1177WAGF/@@download/IGVFFI1177WAGF.fastq.gz",
"md5sum": "3733d8c38f0da2ea12ed61ef2561701e",
"s3_uri": "s3://igvf-files/2023/12/05/c32a1b6d-b53d-4559-a799-1fe7cd1a032e/IGVFFI1177WAGF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep11_S119_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6499XVYU/",
"accession": "IGVFFI6499XVYU",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:39:46.757034+00:00",
"file_format": "fastq",
"file_size": 1760693,
"href": "/sequence-files/IGVFFI6499XVYU/@@download/IGVFFI6499XVYU.fastq.gz",
"md5sum": "19ba980fea5c94b0b1a68e56c7f3788b",
"s3_uri": "s3://igvf-files/2023/12/05/a772dab1-2bc1-4b39-a0a4-8f4f7bc938de/IGVFFI6499XVYU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep10_S118_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3919RUKZ/",
"accession": "IGVFFI3919RUKZ",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:45:18.990400+00:00",
"file_format": "fastq",
"file_size": 7163798,
"href": "/sequence-files/IGVFFI3919RUKZ/@@download/IGVFFI3919RUKZ.fastq.gz",
"md5sum": "156784638a64415a77b76e40618b11af",
"s3_uri": "s3://igvf-files/2023/12/05/c55d06cd-a422-4e86-8484-1c8378b5d78d/IGVFFI3919RUKZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep8_S116_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7655UVBA/",
"accession": "IGVFFI7655UVBA",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep2_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:41:41.146394+00:00",
"file_format": "fastq",
"file_size": 5988053,
"href": "/sequence-files/IGVFFI7655UVBA/@@download/IGVFFI7655UVBA.fastq.gz",
"md5sum": "fd870cff51bb19ba8b36c05ab02f56f4",
"s3_uri": "s3://igvf-files/2023/12/05/83f82dce-af45-4f90-ab6c-079f9c8d1e4a/IGVFFI7655UVBA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep2_S110_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6205NMRV/",
"accession": "IGVFFI6205NMRV",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep3_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:41:58.434576+00:00",
"file_format": "fastq",
"file_size": 1755885,
"href": "/sequence-files/IGVFFI6205NMRV/@@download/IGVFFI6205NMRV.fastq.gz",
"md5sum": "a3d91c644e2779a5e31e955e581df21b",
"s3_uri": "s3://igvf-files/2023/12/05/0410af78-b909-4eb5-8768-12476f77a46a/IGVFFI6205NMRV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep3_S111_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9309XYJY/",
"accession": "IGVFFI9309XYJY",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:45:10.196838+00:00",
"file_format": "fastq",
"file_size": 5789951,
"href": "/sequence-files/IGVFFI9309XYJY/@@download/IGVFFI9309XYJY.fastq.gz",
"md5sum": "aa975433d7c3a91a3beafa5eafcceeac",
"s3_uri": "s3://igvf-files/2023/12/05/78fe83bd-8a68-4d70-88d0-4db99377fe50/IGVFFI9309XYJY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep8_S116_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7939DHUP/",
"accession": "IGVFFI7939DHUP",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:41:23.733355+00:00",
"file_format": "fastq",
"file_size": 1788225,
"href": "/sequence-files/IGVFFI7939DHUP/@@download/IGVFFI7939DHUP.fastq.gz",
"md5sum": "8bb224d5e63bedb3e08c000201f21290",
"s3_uri": "s3://igvf-files/2023/12/05/9f3f63ac-31c5-4f19-9c7b-6f62b54afcb8/IGVFFI7939DHUP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep2_S110_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0693ACZE/",
"accession": "IGVFFI0693ACZE",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:44:18.316951+00:00",
"file_format": "fastq",
"file_size": 1751945,
"href": "/sequence-files/IGVFFI0693ACZE/@@download/IGVFFI0693ACZE.fastq.gz",
"md5sum": "8f092b6163c6b2a05c74fd335e1dadd5",
"s3_uri": "s3://igvf-files/2023/12/05/258d86b0-104b-4bd9-816c-a3b1bd316824/IGVFFI0693ACZE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep7_S115_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0167DNDM/",
"accession": "IGVFFI0167DNDM",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:40:39.516611+00:00",
"file_format": "fastq",
"file_size": 6610400,
"href": "/sequence-files/IGVFFI0167DNDM/@@download/IGVFFI0167DNDM.fastq.gz",
"md5sum": "0259d8c4352f1654cd9280fc9f6860a3",
"s3_uri": "s3://igvf-files/2023/12/05/3f13e108-8a6a-4fbb-a8ab-00ac768bf490/IGVFFI0167DNDM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep11_S119_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9941OBET/",
"accession": "IGVFFI9941OBET",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep3_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:42:15.676961+00:00",
"file_format": "fastq",
"file_size": 6013485,
"href": "/sequence-files/IGVFFI9941OBET/@@download/IGVFFI9941OBET.fastq.gz",
"md5sum": "77af58b066a4546e8215cf6e0763490d",
"s3_uri": "s3://igvf-files/2023/12/05/aee8c043-5592-439c-b068-0df8ea7a5153/IGVFFI9941OBET.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep3_S111_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2512OOCN/",
"accession": "IGVFFI2512OOCN",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep4_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:42:33.289736+00:00",
"file_format": "fastq",
"file_size": 1820862,
"href": "/sequence-files/IGVFFI2512OOCN/@@download/IGVFFI2512OOCN.fastq.gz",
"md5sum": "16f00a9c9846fed80ab7d2eefaa6d406",
"s3_uri": "s3://igvf-files/2023/12/05/0fd0343a-1589-470b-a2df-45300bc7151e/IGVFFI2512OOCN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep4_S112_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0611WYEU/",
"accession": "IGVFFI0611WYEU",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep12_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:41:15.114847+00:00",
"file_format": "fastq",
"file_size": 6665562,
"href": "/sequence-files/IGVFFI0611WYEU/@@download/IGVFFI0611WYEU.fastq.gz",
"md5sum": "26fab5f0a3f0b5c0007d54bb14b7d5cf",
"s3_uri": "s3://igvf-files/2023/12/05/65d9434b-8a79-482c-bf5c-d0648dd61bb0/IGVFFI0611WYEU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep12_S120_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2939DOZQ/",
"accession": "IGVFFI2939DOZQ",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:44:44.217119+00:00",
"file_format": "fastq",
"file_size": 7362281,
"href": "/sequence-files/IGVFFI2939DOZQ/@@download/IGVFFI2939DOZQ.fastq.gz",
"md5sum": "b92ed2fe36a06b1fb19588b3e492ac6f",
"s3_uri": "s3://igvf-files/2023/12/05/e4bf2189-8e18-4ac8-8c78-5c24519cca8e/IGVFFI2939DOZQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep7_S115_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8979DCDR/",
"accession": "IGVFFI8979DCDR",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:42:24.605828+00:00",
"file_format": "fastq",
"file_size": 7455672,
"href": "/sequence-files/IGVFFI8979DCDR/@@download/IGVFFI8979DCDR.fastq.gz",
"md5sum": "226c4c665de30f383318178075af260c",
"s3_uri": "s3://igvf-files/2023/12/05/1341f8ef-12c5-4db9-ad04-62ef3204a179/IGVFFI8979DCDR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep3_S111_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2213DFCW/",
"accession": "IGVFFI2213DFCW",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep4_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:42:41.891143+00:00",
"file_format": "fastq",
"file_size": 1932001,
"href": "/sequence-files/IGVFFI2213DFCW/@@download/IGVFFI2213DFCW.fastq.gz",
"md5sum": "101bfd79a987ad538be82098be31da13",
"s3_uri": "s3://igvf-files/2023/12/05/d0929e09-7d1a-4acc-8c23-a2c5b0f6fa99/IGVFFI2213DFCW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep4_S112_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1618PTZA/",
"accession": "IGVFFI1618PTZA",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:40:21.783817+00:00",
"file_format": "fastq",
"file_size": 1691834,
"href": "/sequence-files/IGVFFI1618PTZA/@@download/IGVFFI1618PTZA.fastq.gz",
"md5sum": "36d3a9becb0098cde53293ab2a7f6d24",
"s3_uri": "s3://igvf-files/2023/12/05/610d2ebd-b2b1-421c-abcf-5b6a69223cab/IGVFFI1618PTZA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep11_S119_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1479BCAI/",
"accession": "IGVFFI1479BCAI",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep5_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:43:34.568285+00:00",
"file_format": "fastq",
"file_size": 7176726,
"href": "/sequence-files/IGVFFI1479BCAI/@@download/IGVFFI1479BCAI.fastq.gz",
"md5sum": "cf223924321634346c80251e6b7e2beb",
"s3_uri": "s3://igvf-files/2023/12/05/2b9388d7-b2e8-46c2-a2f9-9a63debebe8f/IGVFFI1479BCAI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep5_S113_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7158DPXM/",
"accession": "IGVFFI7158DPXM",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep6_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:44:09.355942+00:00",
"file_format": "fastq",
"file_size": 7256291,
"href": "/sequence-files/IGVFFI7158DPXM/@@download/IGVFFI7158DPXM.fastq.gz",
"md5sum": "8ad9934178bff25256c0876c885cb611",
"s3_uri": "s3://igvf-files/2023/12/05/5e9660ee-70e8-4470-a0d0-d7a2a349fbe4/IGVFFI7158DPXM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep6_S114_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0299BKSG/",
"accession": "IGVFFI0299BKSG",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep3_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:42:07.020272+00:00",
"file_format": "fastq",
"file_size": 1891708,
"href": "/sequence-files/IGVFFI0299BKSG/@@download/IGVFFI0299BKSG.fastq.gz",
"md5sum": "07a283d82eb6a08e22e15479254b328f",
"s3_uri": "s3://igvf-files/2023/12/05/78119d2e-e7b5-4022-adc5-73b262ea1c0c/IGVFFI0299BKSG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep3_S111_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1448XSES/",
"accession": "IGVFFI1448XSES",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:39:38.092143+00:00",
"file_format": "fastq",
"file_size": 1695521,
"href": "/sequence-files/IGVFFI1448XSES/@@download/IGVFFI1448XSES.fastq.gz",
"md5sum": "064fee743e9594279b0a35308818dabf",
"s3_uri": "s3://igvf-files/2023/12/05/1a410ee4-2d01-497c-b434-b4d46e1055ae/IGVFFI1448XSES.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep10_S118_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7621LVTV/",
"accession": "IGVFFI7621LVTV",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:39:03.322182+00:00",
"file_format": "fastq",
"file_size": 1850029,
"href": "/sequence-files/IGVFFI7621LVTV/@@download/IGVFFI7621LVTV.fastq.gz",
"md5sum": "23d4b49a5a299adcbf8a08828b3d0b99",
"s3_uri": "s3://igvf-files/2023/12/05/7e635fa3-7564-4b4f-b9ef-f0b2ef6def0e/IGVFFI7621LVTV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep1_S109_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4806HPCX/",
"accession": "IGVFFI4806HPCX",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep8_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:44:52.889298+00:00",
"file_format": "fastq",
"file_size": 1801527,
"href": "/sequence-files/IGVFFI4806HPCX/@@download/IGVFFI4806HPCX.fastq.gz",
"md5sum": "70bde21c90a9cad2e286ec334602befd",
"s3_uri": "s3://igvf-files/2023/12/05/5f63faae-e4e4-4b34-a87d-575524833d27/IGVFFI4806HPCX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep8_S116_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3117SQOM/",
"accession": "IGVFFI3117SQOM",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep12_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:41:06.374986+00:00",
"file_format": "fastq",
"file_size": 5351909,
"href": "/sequence-files/IGVFFI3117SQOM/@@download/IGVFFI3117SQOM.fastq.gz",
"md5sum": "ac3ab15d23a956327a24cd7c0142402d",
"s3_uri": "s3://igvf-files/2023/12/05/6454aafd-80e9-4ea0-a015-6ce7e2d5dcfc/IGVFFI3117SQOM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep12_S120_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4410VWGU/",
"accession": "IGVFFI4410VWGU",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep2_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:41:49.894890+00:00",
"file_format": "fastq",
"file_size": 7419696,
"href": "/sequence-files/IGVFFI4410VWGU/@@download/IGVFFI4410VWGU.fastq.gz",
"md5sum": "825b29bb0761a5817a3319689009b444",
"s3_uri": "s3://igvf-files/2023/12/05/2eee8226-a5ea-41ba-92c1-2cbfd5341793/IGVFFI4410VWGU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep2_S110_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9845UTCQ/",
"accession": "IGVFFI9845UTCQ",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep12_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:40:47.545460+00:00",
"file_format": "fastq",
"file_size": 1575744,
"href": "/sequence-files/IGVFFI9845UTCQ/@@download/IGVFFI9845UTCQ.fastq.gz",
"md5sum": "b6d3e1702d495fa1b63402f1b9132380",
"s3_uri": "s3://igvf-files/2023/12/05/c28b6b36-bf93-493d-baec-90da4b891731/IGVFFI9845UTCQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep12_S120_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5606PIHM/",
"accession": "IGVFFI5606PIHM",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:45:45.165433+00:00",
"file_format": "fastq",
"file_size": 5725704,
"href": "/sequence-files/IGVFFI5606PIHM/@@download/IGVFFI5606PIHM.fastq.gz",
"md5sum": "0bd9ee54d695fc6467f8f4b25fb05475",
"s3_uri": "s3://igvf-files/2023/12/05/4be7d537-87ca-4e19-9832-5ae816420e7c/IGVFFI5606PIHM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep9_S117_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8597TFDI/",
"accession": "IGVFFI8597TFDI",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:44:35.463323+00:00",
"file_format": "fastq",
"file_size": 5937998,
"href": "/sequence-files/IGVFFI8597TFDI/@@download/IGVFFI8597TFDI.fastq.gz",
"md5sum": "e4a55e2399abd8aaa77158b1ab508d4b",
"s3_uri": "s3://igvf-files/2023/12/05/6611c4bc-74f7-4ea0-9eb5-85dd61449149/IGVFFI8597TFDI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep7_S115_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4035VZLU/",
"accession": "IGVFFI4035VZLU",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:42:59.417652+00:00",
"file_format": "fastq",
"file_size": 7515152,
"href": "/sequence-files/IGVFFI4035VZLU/@@download/IGVFFI4035VZLU.fastq.gz",
"md5sum": "b2a55c14d2f543c4a9d5bcd276bb951f",
"s3_uri": "s3://igvf-files/2023/12/05/a71644fd-d628-4697-b550-47918754b313/IGVFFI4035VZLU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep4_S112_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5301MCKD/",
"accession": "IGVFFI5301MCKD",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:39:20.656632+00:00",
"file_format": "fastq",
"file_size": 6107579,
"href": "/sequence-files/IGVFFI5301MCKD/@@download/IGVFFI5301MCKD.fastq.gz",
"md5sum": "6d7997f219cfcbcbfa2696b8a384e6cc",
"s3_uri": "s3://igvf-files/2023/12/05/20da0eed-41f8-461a-afa3-f56e6d1d84b6/IGVFFI5301MCKD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep1_S109_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9035FHIA/",
"accession": "IGVFFI9035FHIA",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:43:43.264126+00:00",
"file_format": "fastq",
"file_size": 1776143,
"href": "/sequence-files/IGVFFI9035FHIA/@@download/IGVFFI9035FHIA.fastq.gz",
"md5sum": "bbd2dda6016773434822c65db50d44b8",
"s3_uri": "s3://igvf-files/2023/12/05/d994493c-7920-49e6-9766-9f9001be1d79/IGVFFI9035FHIA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep6_S114_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2778UYBW/",
"accession": "IGVFFI2778UYBW",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-05T20:43:25.842474+00:00",
"file_format": "fastq",
"file_size": 5795674,
"href": "/sequence-files/IGVFFI2778UYBW/@@download/IGVFFI2778UYBW.fastq.gz",
"md5sum": "9175a24250671b2b44b97b7f07e87f77",
"s3_uri": "s3://igvf-files/2023/12/05/3275e9b5-4fef-418b-8d4a-8bf80b7646d9/IGVFFI2778UYBW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep5_S113_R1_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS3423PSID/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"release_timestamp": "2023-12-20T23:06:16.314428+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM8901HJRO/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8901HJRO",
"aliases": [
"jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-BinB"
],
"classifications": [
"cell line"
],
"institutional_certificates": [],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "Homo sapiens (male) THP-1 cell line (sorting details: FACS bin for 26-50% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "26",
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2023-12-05T20:39:03.322182+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"PPIase F",
"peptidylprolyl isomerase F",
"Cyp-D",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIF",
"CyP-M",
"cyclophilin F",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"cyclophilin 3",
"cyclophilin D",
"rotamase F",
"mitochondrial cyclophilin",
"CypD",
"CYP3"
]
}
],
"uuid": "175fce4c-b6d0-4045-9933-85ec86858835"
}