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INDEXED
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MeasurementSet
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IGVFDS6752GRBU
IGVFDS6752GRBU
released
Json view
File Set Type
experimental data
Summary
snM3C-seq
Assay Term
single nucleus methylation and chromatin conformation capture sequencing
Sample Summaries
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 14 days, Homo sapiens
Protocols
https://www.protocols.io/view/snm3c-seq3-kqdg3x6ezg25/v1
Aliases
chongyuan-luo:pgp_snm3c_C29_day14
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0022EWKG
fastq
reads
R2
2
Illumina NovaSeq X
7
3.0 GB
Chongyuan Luo, UCLA
validated
IGVFFI0480ECYI
fastq
reads
R1
1
Illumina NovaSeq X
2
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI0636KXMB
fastq
reads
R2
2
Illumina NovaSeq X
4
3.0 GB
Chongyuan Luo, UCLA
validated
IGVFFI1143IKQN
fastq
reads
R1
1
Illumina NovaSeq X
6
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI1623XDWA
fastq
reads
R1
1
Illumina NovaSeq X
8
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI1740AOSA
fastq
reads
R2
2
Illumina NovaSeq X
5
3.0 GB
Chongyuan Luo, UCLA
validated
IGVFFI1857XXHT
fastq
reads
R2
2
Read 2
Illumina NovaSeq X
6
3.0 GB
Chongyuan Luo, UCLA
validated
IGVFFI2018JGTW
fastq
reads
R1
1
Illumina NovaSeq X
5
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI2181IXQY
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
3
2.9 GB
Chongyuan Luo, UCLA
validated
IGVFFI3138ZEAC
fastq
reads
R2
2
Illumina NovaSeq X
3
3.1 GB
Chongyuan Luo, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM9932FZKJ
InVitroSystem
fibroblast
fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 14 days, Homo sapiens
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO3754NCBP
chongyuan-luo:C29
unspecified
Homo sapiens
Attribution
Award
HG012079
Principal Investigator(s)
Kathrin Plath
,
Noah Zaitlen
,
Chongyuan Luo
,
Jason Ernst
,
Roy Wollman
Contact P.I.
Chongyuan Luo
Lab
Chongyuan Luo, UCLA