Home

IGVFDS6690WAEP

released
File Set Type
experimental data
Summary
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Assay Term
in vitro CRISPR screen using flow cytometry
Targeted Genes
Sample Summaries
  • HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of MYC) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
Construct Library Sets
  • IGVFDS7857SYCK guide (sgRNA) library targeting accessible genome regions in many genomic loci
Protocols
Aliases
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR1_Rep1_S136
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR1_Rep2_S191
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR2_Rep1_S142
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR2_Rep2_S197
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR3_Rep1_S148
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR3_Rep2_S203
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR4_Rep1_S154
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR4_Rep2_S209

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of MYC) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_HCT116
male
Homo sapiens

Auxiliary Datasets

2 items
Files
AuxiliarySet
cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets
  • jesse-engreitz:auxiliary_sortparams_CRUDO_MYC-Auxin6hrs-FF2
Jesse Engreitz, Stanford
AuxiliarySet
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
  • jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR1_Rep1_S136
  • jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR1_Rep2_S191
  • jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR2_Rep1_S142
  • jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR2_Rep2_S197
  • jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR3_Rep1_S148
  • jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR3_Rep2_S203
  • jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR4_Rep1_S154
  • jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinB-PCR4_Rep2_S209
Jesse Engreitz, Stanford

Documents

1 item
Page
Description
Type
Download
Preview
overview of experimental design
experimental protocol

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford