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MeasurementSet
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IGVFDS6654CYWH
IGVFDS6654CYWH
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP031_G6_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1278MORS
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19U7CA4LE
6
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2068DQZJ
fastq
reads
I1
1
Illumina NovaSeq X
19U7CA4LE
7
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2523QELA
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19U7CA4LE
8
3.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2682ABDQ
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
19U7CA4LE
6
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2875MNCE
fastq
reads
I1
1
Illumina NovaSeq X
19U7CA4LE
6
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4653IBHE
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19U7CA4LE
7
11 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5335PYHH
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
19U7CA4LE
7
2.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5719DGZQ
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
19U7CA4LE
8
916 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5760AAPS
fastq
reads
I1
1
Illumina NovaSeq X
19U7CA4LE
8
462 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6490MGUE
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
19U7CA4LE
8
3.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM5709CORH
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples
Donors
8 items
Accession
Aliases
Sex
Taxa
IGVFDO5194SXHC
igvf:corces_donor_BANN1747
male
Homo sapiens
IGVFDO5410JIJT
igvf:corces_donor_BANN0919
male
Homo sapiens
IGVFDO6013FYCW
igvf:corces_donor_BANN0912
male
Homo sapiens
IGVFDO7109IWDJ
igvf:corces_donor_BANN2005
male
Homo sapiens
IGVFDO7186XJLL
igvf:corces_donor_BANN1639
male
Homo sapiens
IGVFDO8155MCUV
igvf:corces_donor_BANN0437
female
Homo sapiens
IGVFDO8458OKEW
igvf:corces_donor_BANN1623
male
Homo sapiens
IGVFDO9211DWXZ
igvf:corces_donor_BANN1352
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1855NJXL
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP031_G6_RNA
Ryan Corces, Gladstone Institute UCSF