IGVFDS6652SASN

preview
GRU
PUB
{
    "@context": "/terms/",
    "@id": "/measurement-sets/IGVFDS6652SASN/",
    "@type": [
        "MeasurementSet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS6652SASN",
    "aliases": [
        "leif-ludwig:measurement2303522004_scATAC"
    ],
    "assay_term": {
        "@id": "/assay-terms/OBI_0002764/",
        "assay_slims": [
            "chromatin accessibility"
        ],
        "status": "released",
        "term_name": "single-cell ATAC-seq"
    },
    "audit": {
        "WARNING": [
            {
                "category": "missing analysis",
                "detail": "Measurement set [IGVFDS6652SASN](/measurement-sets/IGVFDS6652SASN/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
                "level": 40,
                "level_name": "WARNING",
                "name": "audit_input_for",
                "path": "/measurement-sets/IGVFDS6652SASN/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping",
        "contact_pi": {
            "@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
            "title": "Ansuman Satpathy"
        },
        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
    },
    "control_for": [],
    "controlled_access": true,
    "creation_timestamp": "2025-03-05T19:51:05.485404+00:00",
    "data_use_limitation_summaries": [
        "GRU-PUB"
    ],
    "donors": [
        {
            "@id": "/human-donors/IGVFDO8030XJSG/",
            "accession": "IGVFDO8030XJSG",
            "aliases": [
                "leif-ludwig:donor2303522004"
            ],
            "sex": "male",
            "status": "preview",
            "taxa": "Homo sapiens"
        }
    ],
    "externally_hosted": false,
    "file_set_type": "experimental data",
    "files": [
        {
            "@id": "/configuration-files/IGVFFI7625MPIF/",
            "accession": "IGVFFI7625MPIF",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_L005_seqspec"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2025-03-19T16:12:05.499716+00:00",
            "file_format": "yaml",
            "file_size": 1490,
            "href": "/configuration-files/IGVFFI7625MPIF/@@download/IGVFFI7625MPIF.yaml.gz",
            "md5sum": "c0803494fdf0bbbd56d65d70af0fa482",
            "s3_uri": "s3://igvf-files/2025/03/19/92b72bc1-59ba-4524-8468-170f10839a19/IGVFFI7625MPIF.yaml.gz",
            "status": "preview",
            "submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2303522004_scATAC_L005.spec.yaml.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI3992MUBU/",
            "accession": "IGVFFI3992MUBU",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_L007_seqspec"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2025-03-19T16:12:00.518172+00:00",
            "file_format": "yaml",
            "file_size": 1490,
            "href": "/configuration-files/IGVFFI3992MUBU/@@download/IGVFFI3992MUBU.yaml.gz",
            "md5sum": "347f1a5476d8ff14c484766e35f75ac5",
            "s3_uri": "s3://igvf-files/2025/03/19/6bb09266-86c0-4f41-838a-800fb366384b/IGVFFI3992MUBU.yaml.gz",
            "status": "preview",
            "submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2303522004_scATAC_L007.spec.yaml.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI0582WJIH/",
            "accession": "IGVFFI0582WJIH",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_L002_seqspec"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2025-03-19T16:12:03.561877+00:00",
            "file_format": "yaml",
            "file_size": 1494,
            "href": "/configuration-files/IGVFFI0582WJIH/@@download/IGVFFI0582WJIH.yaml.gz",
            "md5sum": "f16d0ce4aa230356ec34340bf4bb2f1a",
            "s3_uri": "s3://igvf-files/2025/03/19/832f8d25-16a2-4ad3-a3fd-81609fa55ee5/IGVFFI0582WJIH.yaml.gz",
            "status": "preview",
            "submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2303522004_scATAC_L002.spec.yaml.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI9628LCJH/",
            "accession": "IGVFFI9628LCJH",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_L006_seqspec"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2025-03-19T16:12:07.188164+00:00",
            "file_format": "yaml",
            "file_size": 1494,
            "href": "/configuration-files/IGVFFI9628LCJH/@@download/IGVFFI9628LCJH.yaml.gz",
            "md5sum": "76c901a187cd7beeb5689706450cd0b5",
            "s3_uri": "s3://igvf-files/2025/03/19/00f08f14-7d8e-45d4-8310-a34823b134e7/IGVFFI9628LCJH.yaml.gz",
            "status": "preview",
            "submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2303522004_scATAC_L006.spec.yaml.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI7356ZJHG/",
            "accession": "IGVFFI7356ZJHG",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_L008_seqspec"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2025-03-19T16:11:57.303489+00:00",
            "file_format": "yaml",
            "file_size": 1491,
            "href": "/configuration-files/IGVFFI7356ZJHG/@@download/IGVFFI7356ZJHG.yaml.gz",
            "md5sum": "43c234fa2c9ce75804081b4b24e4ffdc",
            "s3_uri": "s3://igvf-files/2025/03/19/0355b78e-21fb-4115-945c-93d87048fbf4/IGVFFI7356ZJHG.yaml.gz",
            "status": "preview",
            "submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2303522004_scATAC_L008.spec.yaml.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI7520JKGR/",
            "accession": "IGVFFI7520JKGR",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_L001_seqspec"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2025-03-19T16:11:58.791485+00:00",
            "file_format": "yaml",
            "file_size": 1490,
            "href": "/configuration-files/IGVFFI7520JKGR/@@download/IGVFFI7520JKGR.yaml.gz",
            "md5sum": "610fbe0fc202752d48c695fd050d1a66",
            "s3_uri": "s3://igvf-files/2025/03/19/29fc12d8-217a-4671-9957-16b178eaa308/IGVFFI7520JKGR.yaml.gz",
            "status": "preview",
            "submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2303522004_scATAC_L001.spec.yaml.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI8231EBDC/",
            "accession": "IGVFFI8231EBDC",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_L003_seqspec"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2025-03-19T16:12:08.743204+00:00",
            "file_format": "yaml",
            "file_size": 1492,
            "href": "/configuration-files/IGVFFI8231EBDC/@@download/IGVFFI8231EBDC.yaml.gz",
            "md5sum": "7652304d0cab921d4969ada8e2e5dba5",
            "s3_uri": "s3://igvf-files/2025/03/19/d365a198-8dea-4608-9a9a-874a04a0e4b5/IGVFFI8231EBDC.yaml.gz",
            "status": "preview",
            "submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2303522004_scATAC_L003.spec.yaml.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI1343AYBT/",
            "accession": "IGVFFI1343AYBT",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_L004_seqspec"
            ],
            "content_type": "seqspec",
            "creation_timestamp": "2025-03-19T16:12:01.915475+00:00",
            "file_format": "yaml",
            "file_size": 1486,
            "href": "/configuration-files/IGVFFI1343AYBT/@@download/IGVFFI1343AYBT.yaml.gz",
            "md5sum": "aeb8d9643f2f88cff4f72d9d66c6c6a5",
            "s3_uri": "s3://igvf-files/2025/03/19/d1a0d08d-1d55-49da-ab56-920f93f6659e/IGVFFI1343AYBT.yaml.gz",
            "status": "preview",
            "submitted_file_name": "/Users/fermel/work/IGVF/seqspecs_samples_6-15/measurement2303522004_scATAC_L004.spec.yaml.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI9135JMZB/",
            "accession": "IGVFFI9135JMZB",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R1_006"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:43:15.642892+00:00",
            "file_format": "fastq",
            "file_size": 3010449372,
            "href": "/sequence-files/IGVFFI9135JMZB/@@download/IGVFFI9135JMZB.fastq.gz",
            "md5sum": "9936e1464ca24dbb1dc19305984afc7b",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/69a3f287-e279-4218-97f8-6f1ae3d51a22/IGVFFI9135JMZB.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L006_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6655IQEB/",
            "accession": "IGVFFI6655IQEB",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R2_003"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:47:24.365487+00:00",
            "file_format": "fastq",
            "file_size": 862631520,
            "href": "/sequence-files/IGVFFI6655IQEB/@@download/IGVFFI6655IQEB.fastq.gz",
            "md5sum": "b3abdbb736abce9f162445c066e5df9c",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/f468ce22-b1e8-4220-a507-9877d9d2d496/IGVFFI6655IQEB.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L003_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI4982FMBB/",
            "accession": "IGVFFI4982FMBB",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R1_005"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:42:21.811241+00:00",
            "file_format": "fastq",
            "file_size": 2988100341,
            "href": "/sequence-files/IGVFFI4982FMBB/@@download/IGVFFI4982FMBB.fastq.gz",
            "md5sum": "0c4ce530e6167a5a616841b75ed044b6",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/6a36b64b-fcce-469f-ad5a-ccbb1f7157a2/IGVFFI4982FMBB.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L005_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI0142ZQVM/",
            "accession": "IGVFFI0142ZQVM",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R3_002"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:51:49.643871+00:00",
            "file_format": "fastq",
            "file_size": 2954692947,
            "href": "/sequence-files/IGVFFI0142ZQVM/@@download/IGVFFI0142ZQVM.fastq.gz",
            "md5sum": "59b083c8ee02ddac0cc1d9908da719df",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/1a28a3fd-eee8-43db-8194-1ed4f13ebf7b/IGVFFI0142ZQVM.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L002_R3_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI0044NCHE/",
            "accession": "IGVFFI0044NCHE",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R2_007"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:47:47.893404+00:00",
            "file_format": "fastq",
            "file_size": 922970037,
            "href": "/sequence-files/IGVFFI0044NCHE/@@download/IGVFFI0044NCHE.fastq.gz",
            "md5sum": "9479664b8caa01f42528a214873e0ec1",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/68c68f8f-08fb-409e-ab8b-166ec2fcef06/IGVFFI0044NCHE.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L007_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI7011AETL/",
            "accession": "IGVFFI7011AETL",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R3_001"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:48:20.734620+00:00",
            "file_format": "fastq",
            "file_size": 2944284354,
            "href": "/sequence-files/IGVFFI7011AETL/@@download/IGVFFI7011AETL.fastq.gz",
            "md5sum": "003e25c799b3ffc7775573dbc780432c",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/b483074b-d087-4d38-8250-1a3377b8fc33/IGVFFI7011AETL.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L001_R3_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI4317UANR/",
            "accession": "IGVFFI4317UANR",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R3_005"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:50:57.038201+00:00",
            "file_format": "fastq",
            "file_size": 2906249753,
            "href": "/sequence-files/IGVFFI4317UANR/@@download/IGVFFI4317UANR.fastq.gz",
            "md5sum": "b336c0f7bc3eaf5d1db168f7458ee915",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/767b2882-d2f1-4470-88ff-1f5013d3f54b/IGVFFI4317UANR.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L005_R3_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6911AGJJ/",
            "accession": "IGVFFI6911AGJJ",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R3_006"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:54:25.791356+00:00",
            "file_format": "fastq",
            "file_size": 2928735818,
            "href": "/sequence-files/IGVFFI6911AGJJ/@@download/IGVFFI6911AGJJ.fastq.gz",
            "md5sum": "62ab5c365f921621d3a07a42257eb8e4",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/e78f9231-4781-40ae-aaa5-eff8550b8221/IGVFFI6911AGJJ.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L006_R3_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6325OIJX/",
            "accession": "IGVFFI6325OIJX",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R2_001"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:45:43.555865+00:00",
            "file_format": "fastq",
            "file_size": 940568589,
            "href": "/sequence-files/IGVFFI6325OIJX/@@download/IGVFFI6325OIJX.fastq.gz",
            "md5sum": "45f8410fe41457d0d92f18e6261fa177",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/75d5463f-2b1a-4b2d-ba3b-0f1406a41b84/IGVFFI6325OIJX.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L001_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI8867AEOU/",
            "accession": "IGVFFI8867AEOU",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R3_008"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:49:15.501598+00:00",
            "file_format": "fastq",
            "file_size": 2890731357,
            "href": "/sequence-files/IGVFFI8867AEOU/@@download/IGVFFI8867AEOU.fastq.gz",
            "md5sum": "46f4b414eb55ac94ca8a7f5bdd08c222",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/fa066985-e378-4433-8245-b7778ab89706/IGVFFI8867AEOU.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L008_R3_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2185VLHJ/",
            "accession": "IGVFFI2185VLHJ",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R3_003"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:50:06.531841+00:00",
            "file_format": "fastq",
            "file_size": 2677255784,
            "href": "/sequence-files/IGVFFI2185VLHJ/@@download/IGVFFI2185VLHJ.fastq.gz",
            "md5sum": "1e2376635495518587fbcdd289046029",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/ebceba5e-9649-41be-9b69-989b05af79a7/IGVFFI2185VLHJ.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L003_R3_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI8581SDCV/",
            "accession": "IGVFFI8581SDCV",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R1_008"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:37:55.649859+00:00",
            "file_format": "fastq",
            "file_size": 2976979341,
            "href": "/sequence-files/IGVFFI8581SDCV/@@download/IGVFFI8581SDCV.fastq.gz",
            "md5sum": "a07530e783178e61d54dc1dabe32d692",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/8ff9ae08-d6d4-4452-a83f-c83e3c78d0fb/IGVFFI8581SDCV.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L008_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI0930MAFG/",
            "accession": "IGVFFI0930MAFG",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R1_003"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:44:07.998836+00:00",
            "file_format": "fastq",
            "file_size": 2734320267,
            "href": "/sequence-files/IGVFFI0930MAFG/@@download/IGVFFI0930MAFG.fastq.gz",
            "md5sum": "320efc81cc6f320ce783dc78ef9530c0",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/acbf3f7f-f5fd-4242-a01a-3c4a68742801/IGVFFI0930MAFG.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L003_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI3764RHAT/",
            "accession": "IGVFFI3764RHAT",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R3_007"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:52:42.247408+00:00",
            "file_format": "fastq",
            "file_size": 2901024334,
            "href": "/sequence-files/IGVFFI3764RHAT/@@download/IGVFFI3764RHAT.fastq.gz",
            "md5sum": "c463c8ec5182452d0cf89bf088804d13",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/55169602-d8e5-4844-a7e1-b189a2e2f1bc/IGVFFI3764RHAT.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L007_R3_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI5807MKNI/",
            "accession": "IGVFFI5807MKNI",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R1_001"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:38:49.058760+00:00",
            "file_format": "fastq",
            "file_size": 3029718911,
            "href": "/sequence-files/IGVFFI5807MKNI/@@download/IGVFFI5807MKNI.fastq.gz",
            "md5sum": "e8b15002b051a16398027a08f228fc5b",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/a276607f-b888-494e-9f05-43353a4868f6/IGVFFI5807MKNI.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L001_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6485XXIE/",
            "accession": "IGVFFI6485XXIE",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R1_007"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:39:42.690196+00:00",
            "file_format": "fastq",
            "file_size": 2978356851,
            "href": "/sequence-files/IGVFFI6485XXIE/@@download/IGVFFI6485XXIE.fastq.gz",
            "md5sum": "610d57d72e3d231df5c05111bfae9aa4",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/a8376fd9-4f9f-4eb5-ad62-4d1c45ba2039/IGVFFI6485XXIE.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L007_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI3791HCBU/",
            "accession": "IGVFFI3791HCBU",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R1_004"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:40:35.042413+00:00",
            "file_format": "fastq",
            "file_size": 2991042793,
            "href": "/sequence-files/IGVFFI3791HCBU/@@download/IGVFFI3791HCBU.fastq.gz",
            "md5sum": "e1b8d993f81da43d6e7e3a9c7ee7e007",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/1ec85a62-e3a8-4b8a-af43-9213376a13d0/IGVFFI3791HCBU.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L004_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI5782IPVH/",
            "accession": "IGVFFI5782IPVH",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R1_002"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:41:27.392167+00:00",
            "file_format": "fastq",
            "file_size": 3032012956,
            "href": "/sequence-files/IGVFFI5782IPVH/@@download/IGVFFI5782IPVH.fastq.gz",
            "md5sum": "98549a46809702bea775c67b3de31a05",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/7539246a-26cf-4916-ae0f-1ac50ccfb31f/IGVFFI5782IPVH.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L002_R1_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6896PRGQ/",
            "accession": "IGVFFI6896PRGQ",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R2_005"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:44:55.484271+00:00",
            "file_format": "fastq",
            "file_size": 927011443,
            "href": "/sequence-files/IGVFFI6896PRGQ/@@download/IGVFFI6896PRGQ.fastq.gz",
            "md5sum": "c5f52e468a280572fd9a94851e976c89",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/7d640336-5e89-40f7-bb1d-4cee8e8d5175/IGVFFI6896PRGQ.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L005_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI8859IANZ/",
            "accession": "IGVFFI8859IANZ",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R2_006"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:45:20.118465+00:00",
            "file_format": "fastq",
            "file_size": 933512835,
            "href": "/sequence-files/IGVFFI8859IANZ/@@download/IGVFFI8859IANZ.fastq.gz",
            "md5sum": "35501467da983a105399cc7d20299b25",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/951ae7a4-82ae-46af-a69b-6a89a6e783fa/IGVFFI8859IANZ.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L006_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6033UENG/",
            "accession": "IGVFFI6033UENG",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R2_004"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:46:06.709957+00:00",
            "file_format": "fastq",
            "file_size": 929970686,
            "href": "/sequence-files/IGVFFI6033UENG/@@download/IGVFFI6033UENG.fastq.gz",
            "md5sum": "e6691941ac140652dca754426142a097",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/fb6eb9d4-12ca-4ff2-8851-178cece5d20b/IGVFFI6033UENG.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L004_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI4299VWXS/",
            "accession": "IGVFFI4299VWXS",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R2_002"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:46:32.428200+00:00",
            "file_format": "fastq",
            "file_size": 946240248,
            "href": "/sequence-files/IGVFFI4299VWXS/@@download/IGVFFI4299VWXS.fastq.gz",
            "md5sum": "1b8553b9a71b63ad66c4b0db1f7593d4",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/5422fc45-597c-42e5-8a7f-e36aaa7f864c/IGVFFI4299VWXS.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L002_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI7620KQYP/",
            "accession": "IGVFFI7620KQYP",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R2_008"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:46:57.604673+00:00",
            "file_format": "fastq",
            "file_size": 921043239,
            "href": "/sequence-files/IGVFFI7620KQYP/@@download/IGVFFI7620KQYP.fastq.gz",
            "md5sum": "0863c9c01c461108f2378efe2557ca31",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/ec5f9f67-1a2a-4fde-95f9-02bac33e0886/IGVFFI7620KQYP.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L008_R2_001.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI3069IVMI/",
            "accession": "IGVFFI3069IVMI",
            "aliases": [
                "leif-ludwig:measurement2303522004_scATAC_R3_004"
            ],
            "content_type": "reads",
            "controlled_access": true,
            "creation_timestamp": "2025-03-12T21:53:33.881744+00:00",
            "file_format": "fastq",
            "file_size": 2901136728,
            "href": "/sequence-files/IGVFFI3069IVMI/@@download/IGVFFI3069IVMI.fastq.gz",
            "md5sum": "292f5fe631464707d317413f10a09b3a",
            "s3_uri": "s3://igvf-restricted-files/2025/03/12/07c2951a-9a1c-4463-bf13-98d136ec27d1/IGVFFI3069IVMI.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0022841/",
                "status": "released",
                "term_name": "Illumina NovaSeq X Plus"
            },
            "status": "preview",
            "submitted_file_name": "/data/cephfs-1/work/groups/ludwig/scratch/IGVF/fastq/A4859/hPBMC_2303522004_Multiome_ATAC_S1_L004_R3_001.fastq.gz",
            "upload_status": "validated"
        }
    ],
    "input_for": [],
    "lab": {
        "@id": "/labs/leif-ludwig/",
        "title": "Leif Ludwig, MDC"
    },
    "multiome_size": 2,
    "notes": "This measurement set previously used scMito-seq as a preferred_assay_title, but this enum is now replaced with 10x multiome with scMito-seq.",
    "onlist_files": [
        "/tabular-files/IGVFFI7587TJLC/"
    ],
    "onlist_method": "no combination",
    "preferred_assay_title": "10x multiome with scMito-seq",
    "protocols": [
        "https://www.protocols.io/view/mtscmultiome-atac-gex-protocol-d554888w"
    ],
    "related_multiome_datasets": [
        {
            "@id": "/measurement-sets/IGVFDS9009JMDG/",
            "accession": "IGVFDS9009JMDG",
            "status": "preview"
        }
    ],
    "samples": [
        {
            "@id": "/primary-cells/IGVFSM9795ZRRT/",
            "@type": [
                "PrimaryCell",
                "Biosample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM9795ZRRT",
            "aliases": [
                "leif-ludwig:sample2303522004"
            ],
            "classifications": [
                "primary cell"
            ],
            "institutional_certificates": [
                {
                    "@id": "/institutional-certificates/426307fa-9064-4824-a88a-2e033218fc6c/",
                    "certificate_identifier": "IP115-11",
                    "controlled_access": true,
                    "data_use_limitation": "GRU",
                    "data_use_limitation_modifiers": [
                        "PUB"
                    ],
                    "status": "released"
                }
            ],
            "sample_terms": [
                {
                    "@id": "/sample-terms/CL_2000001/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "released",
                    "summary": "peripheral blood mononuclear cell",
                    "term_name": "peripheral blood mononuclear cell"
                }
            ],
            "status": "preview",
            "summary": "Homo sapiens (male, 63 years) peripheral blood mononuclear cell",
            "taxa": "Homo sapiens"
        }
    ],
    "schema_version": "26",
    "status": "preview",
    "submitted_by": {
        "@id": "/users/8164e524-79d5-4407-8a75-c0ea353d28ea/",
        "title": "Ludwig Lab"
    },
    "submitted_files_timestamp": "2025-03-12T21:37:55.649859+00:00",
    "summary": "10x multiome with scMito-seq",
    "uuid": "b01d6080-d373-4608-928f-bc0af803a99e"
}