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IGVFDS6641LPPX

released
GRU
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 183)
Protocols
Aliases
buenrostro-bernstein:scATAC Lib 463
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

36 items
Read Names
fastq
reads
R1
1071
Read 1
22773CLT3
2.4 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
987
Read 2
22773CLT3
1.1 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8485
Read 2
22LMVNLT4
1.7 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8773
Read 2
22LMVNLT4
1.6 GB
Jason Buenrostro, Broad
validated
fastq
reads
I1
8485
Barcode index
22LMVNLT4
1.0 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
1071
Read 2
22773CLT3
1.1 GB
Jason Buenrostro, Broad
validated
fastq
reads
R1
1029
Read 1
22773CLT3
2.4 GB
Jason Buenrostro, Broad
validated
fastq
reads
I1
8581
Barcode index
22LMVNLT4
986 MB
Jason Buenrostro, Broad
validated
fastq
reads
R2
8869
Read 2
22LMVNLT4
1.7 GB
Jason Buenrostro, Broad
validated
fastq
reads
I1
987
Barcode index
22773CLT3
998 MB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 183)

Donors

100 items
Aliases
  • buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
  • buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:scRNA Lib 442
Jason Buenrostro, Broad