Home

IGVFDS6624LIQT

preview
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 33.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 55.0 years) peripheral blood mononuclear cell; ... and 18 more samples
Protocols
Aliases
jimmie-ye:XX13-SC1_snATAC
Attribution
Jimmie Ye, UCSF

Sequencing Results (Illumina)

24 items
Read Names
fastq
reads
R3
156
Read 2
5.9 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
154
Barcode index
2.8 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
158
Read 1
5.8 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
155
Read 1
5.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
157
Barcode index
3.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
157
Read 1
5.8 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
154
Read 1
5.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
156
Read 1
3.8 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
155
Read 2
7.8 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
155
1.2 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 33.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 55.0 years) peripheral blood mononuclear cell; ... and 18 more samples

Donors

20 items
Aliases
  • jimmie-ye:donor_324
female
Homo sapiens
  • jimmie-ye:donor_106
female
Homo sapiens
  • jimmie-ye:donor_95
female
Homo sapiens
  • jimmie-ye:donor_199
male
Homo sapiens
  • jimmie-ye:donor_343
female
Homo sapiens
  • jimmie-ye:donor_102
female
Homo sapiens
  • jimmie-ye:donor_296
female
Homo sapiens
  • jimmie-ye:donor_10
male
Homo sapiens
  • jimmie-ye:donor_9
male
Homo sapiens
  • jimmie-ye:donor_309
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX13-SC1_snRNA
Jimmie Ye, UCSF