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INDEXED
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MeasurementSet
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IGVFDS6532YIGO
IGVFDS6532YIGO
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 188)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 496
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
36 items
1
2
3
4
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0283QQHZ
fastq
reads
I1
1038
Barcode index
IGVFFI3361JHDN
Illumina NovaSeq X
22773CLT3
455 MB
Jason Buenrostro, Broad
validated
IGVFFI0395QLPH
fastq
reads
I1
9172
Barcode index
IGVFFI5121YQLN
Illumina NovaSeq X
22LMVNLT4
433 MB
Jason Buenrostro, Broad
validated
IGVFFI0834JPDB
fastq
reads
R1
954
Read 1
IGVFFI8434GZVS
Illumina NovaSeq X
22773CLT3
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI1048CTBQ
fastq
reads
I1
8596
Barcode index
IGVFFI5731SCAV
Illumina NovaSeq X
22LMVNLT4
455 MB
Jason Buenrostro, Broad
validated
IGVFFI1216NFJG
fastq
reads
R1
8980
Read 1
IGVFFI6539BOLT
Illumina NovaSeq X
22LMVNLT4
752 MB
Jason Buenrostro, Broad
validated
IGVFFI1312UCER
fastq
reads
R2
8884
Read 2
IGVFFI9440TPYI
Illumina NovaSeq X
22LMVNLT4
752 MB
Jason Buenrostro, Broad
validated
IGVFFI1406SZMK
fastq
reads
I1
8500
Barcode index
IGVFFI6873DOMZ
Illumina NovaSeq X
22LMVNLT4
471 MB
Jason Buenrostro, Broad
validated
IGVFFI1559QOSP
fastq
reads
R1
9076
Read 1
IGVFFI7025HUJQ
Illumina NovaSeq X
22LMVNLT4
779 MB
Jason Buenrostro, Broad
validated
IGVFFI2483IQBG
fastq
reads
R1
8596
Read 1
IGVFFI5731SCAV
Illumina NovaSeq X
22LMVNLT4
784 MB
Jason Buenrostro, Broad
validated
IGVFFI2742MNGE
fastq
reads
R1
8500
Read 1
IGVFFI6873DOMZ
Illumina NovaSeq X
22LMVNLT4
814 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM1144ESXR
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 188)
Donors
100 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0143YSWQ
buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
IGVFDO0144AKUR
buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
IGVFDO0166JLWT
buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
IGVFDO0186ZZOL
buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
IGVFDO0233FJJF
buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
IGVFDO0273LMQQ
buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
IGVFDO0285FFEG
buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
IGVFDO0392YIJG
buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0452ROLO
buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS7428FAPP
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 451
Jason Buenrostro, Broad