Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS6417ZIEI
IGVFDS6417ZIEI
released
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Description
Colitis_chronic DSS04-DSS-m1,DSS04-DSS-m2,DSS04-DSS-m3; Control DSS04-Control-m4,DSS04-Control-m5
Assay Term
single-cell ATAC-seq
Sample Summaries
Mus musculus C57BL/6J colon cell
Protocols
https://www.protocols.io/view/share-seq-v1-6qpvrdexpgmk/v1
Aliases
buenrostro-bernstein:surya-mouse-colon_mm-set1
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
3 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI3705PWOQ
fastq
reads
R1
1
Read 1
IGVFFI0542VGMW
Illumina NovaSeq 6000
502 MB
Jason Buenrostro, Broad
validated
IGVFFI7960YELB
fastq
reads
I1
1
Barcode index
IGVFFI0542VGMW
Illumina NovaSeq 6000
257 MB
Jason Buenrostro, Broad
validated
IGVFFI9338UHLG
fastq
reads
R2
1
Read 2
IGVFFI0542VGMW
Illumina NovaSeq 6000
521 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM0332KRWE
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
Donors
5 items
Accession
Aliases
Sex
Taxa
IGVFDO0874UTHD
buenrostro-bernstein:surya-DSS04-DSS-m1
unspecified
Mus musculus
IGVFDO1905EGPL
buenrostro-bernstein:surya-DSS04-Control-m4
unspecified
Mus musculus
IGVFDO4534AFBQ
buenrostro-bernstein:surya-DSS04-Control-m5
unspecified
Mus musculus
IGVFDO4695LJXX
buenrostro-bernstein:surya-DSS04-DSS-m3
unspecified
Mus musculus
IGVFDO6702IDOE
buenrostro-bernstein:surya-DSS04-DSS-m2
unspecified
Mus musculus
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0237MRDL
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
buenrostro-bernstein:surya-mouse-colitis-primary-cell-analysis-set
Jason Buenrostro, Broad
Related Multiome Datasets
5 items
Accession
Type
Summary
Aliases
Lab
IGVFDS1815DBIG
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set15
Jason Buenrostro, Broad
IGVFDS5627HIFZ
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set3
Jason Buenrostro, Broad
IGVFDS5841CMLA
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set14
Jason Buenrostro, Broad
IGVFDS5960BAQO
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set2
Jason Buenrostro, Broad
IGVFDS6334KAGT
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set13
Jason Buenrostro, Broad