{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS6385NQQG/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS6385NQQG",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS6385NQQG](/measurement-sets/IGVFDS6385NQQG/) has sequence file(s) [IGVFFI3062VSUU](/sequence-files/IGVFFI3062VSUU/), [IGVFFI6916VOCL](/sequence-files/IGVFFI6916VOCL/), [IGVFFI5052ZFQL](/sequence-files/IGVFFI5052ZFQL/), [IGVFFI0444WJCP](/sequence-files/IGVFFI0444WJCP/), [IGVFFI3245ISFR](/sequence-files/IGVFFI3245ISFR/), [IGVFFI9121UYOA](/sequence-files/IGVFFI9121UYOA/), [IGVFFI9252MKIR](/sequence-files/IGVFFI9252MKIR/), [IGVFFI1227TPAP](/sequence-files/IGVFFI1227TPAP/), [IGVFFI7998UZPZ](/sequence-files/IGVFFI7998UZPZ/), [IGVFFI4274HPXV](/sequence-files/IGVFFI4274HPXV/), [IGVFFI6509FFWS](/sequence-files/IGVFFI6509FFWS/), [IGVFFI8121QUML](/sequence-files/IGVFFI8121QUML/), [IGVFFI0874ELLJ](/sequence-files/IGVFFI0874ELLJ/), [IGVFFI9652TOTI](/sequence-files/IGVFFI9652TOTI/), [IGVFFI1484OTDY](/sequence-files/IGVFFI1484OTDY/), [IGVFFI6376ACFI](/sequence-files/IGVFFI6376ACFI/), [IGVFFI6776FIUQ](/sequence-files/IGVFFI6776FIUQ/), [IGVFFI4896WCJP](/sequence-files/IGVFFI4896WCJP/), [IGVFFI4775TOVJ](/sequence-files/IGVFFI4775TOVJ/), [IGVFFI8229EFSH](/sequence-files/IGVFFI8229EFSH/), [IGVFFI5055OLYZ](/sequence-files/IGVFFI5055OLYZ/), [IGVFFI6291GNEN](/sequence-files/IGVFFI6291GNEN/), [IGVFFI3676ZABW](/sequence-files/IGVFFI3676ZABW/), [IGVFFI3144EDLY](/sequence-files/IGVFFI3144EDLY/), [IGVFFI0305EJJX](/sequence-files/IGVFFI0305EJJX/), [IGVFFI0013OKBE](/sequence-files/IGVFFI0013OKBE/), [IGVFFI8854FRLI](/sequence-files/IGVFFI8854FRLI/), [IGVFFI5483IFWV](/sequence-files/IGVFFI5483IFWV/), [IGVFFI2972AIYT](/sequence-files/IGVFFI2972AIYT/), [IGVFFI7160XNOT](/sequence-files/IGVFFI7160XNOT/), [IGVFFI6363OTAR](/sequence-files/IGVFFI6363OTAR/), [IGVFFI4269HRKU](/sequence-files/IGVFFI4269HRKU/), [IGVFFI2700HWDE](/sequence-files/IGVFFI2700HWDE/), [IGVFFI5249TDOB](/sequence-files/IGVFFI5249TDOB/), [IGVFFI4399DQMR](/sequence-files/IGVFFI4399DQMR/), [IGVFFI5518THVT](/sequence-files/IGVFFI5518THVT/), [IGVFFI9267SBCR](/sequence-files/IGVFFI9267SBCR/), [IGVFFI8709YHGT](/sequence-files/IGVFFI8709YHGT/), [IGVFFI4969WOSK](/sequence-files/IGVFFI4969WOSK/), [IGVFFI5047TUYF](/sequence-files/IGVFFI5047TUYF/), [IGVFFI3990NIHL](/sequence-files/IGVFFI3990NIHL/), [IGVFFI4044QNPW](/sequence-files/IGVFFI4044QNPW/), [IGVFFI2681LSZL](/sequence-files/IGVFFI2681LSZL/), [IGVFFI3391TJFU](/sequence-files/IGVFFI3391TJFU/), [IGVFFI9758AKZA](/sequence-files/IGVFFI9758AKZA/), [IGVFFI2054FBDI](/sequence-files/IGVFFI2054FBDI/), [IGVFFI0889VGER](/sequence-files/IGVFFI0889VGER/), [IGVFFI4271QQCQ](/sequence-files/IGVFFI4271QQCQ/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS6385NQQG/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS6385NQQG](/measurement-sets/IGVFDS6385NQQG/) has sequence file(s): [IGVFFI3062VSUU](/sequence-files/IGVFFI3062VSUU/), [IGVFFI6916VOCL](/sequence-files/IGVFFI6916VOCL/), [IGVFFI5052ZFQL](/sequence-files/IGVFFI5052ZFQL/), [IGVFFI0444WJCP](/sequence-files/IGVFFI0444WJCP/), [IGVFFI3245ISFR](/sequence-files/IGVFFI3245ISFR/), [IGVFFI9121UYOA](/sequence-files/IGVFFI9121UYOA/), [IGVFFI9252MKIR](/sequence-files/IGVFFI9252MKIR/), [IGVFFI1227TPAP](/sequence-files/IGVFFI1227TPAP/), [IGVFFI7998UZPZ](/sequence-files/IGVFFI7998UZPZ/), [IGVFFI4274HPXV](/sequence-files/IGVFFI4274HPXV/), [IGVFFI6509FFWS](/sequence-files/IGVFFI6509FFWS/), [IGVFFI8121QUML](/sequence-files/IGVFFI8121QUML/), [IGVFFI0874ELLJ](/sequence-files/IGVFFI0874ELLJ/), [IGVFFI9652TOTI](/sequence-files/IGVFFI9652TOTI/), [IGVFFI1484OTDY](/sequence-files/IGVFFI1484OTDY/), [IGVFFI6376ACFI](/sequence-files/IGVFFI6376ACFI/), [IGVFFI6776FIUQ](/sequence-files/IGVFFI6776FIUQ/), [IGVFFI4896WCJP](/sequence-files/IGVFFI4896WCJP/), [IGVFFI4775TOVJ](/sequence-files/IGVFFI4775TOVJ/), [IGVFFI8229EFSH](/sequence-files/IGVFFI8229EFSH/), [IGVFFI5055OLYZ](/sequence-files/IGVFFI5055OLYZ/), [IGVFFI6291GNEN](/sequence-files/IGVFFI6291GNEN/), [IGVFFI3676ZABW](/sequence-files/IGVFFI3676ZABW/), [IGVFFI3144EDLY](/sequence-files/IGVFFI3144EDLY/), [IGVFFI0305EJJX](/sequence-files/IGVFFI0305EJJX/), [IGVFFI0013OKBE](/sequence-files/IGVFFI0013OKBE/), [IGVFFI8854FRLI](/sequence-files/IGVFFI8854FRLI/), [IGVFFI5483IFWV](/sequence-files/IGVFFI5483IFWV/), [IGVFFI2972AIYT](/sequence-files/IGVFFI2972AIYT/), [IGVFFI7160XNOT](/sequence-files/IGVFFI7160XNOT/), [IGVFFI6363OTAR](/sequence-files/IGVFFI6363OTAR/), [IGVFFI4269HRKU](/sequence-files/IGVFFI4269HRKU/), [IGVFFI2700HWDE](/sequence-files/IGVFFI2700HWDE/), [IGVFFI5249TDOB](/sequence-files/IGVFFI5249TDOB/), [IGVFFI4399DQMR](/sequence-files/IGVFFI4399DQMR/), [IGVFFI5518THVT](/sequence-files/IGVFFI5518THVT/), [IGVFFI9267SBCR](/sequence-files/IGVFFI9267SBCR/), [IGVFFI8709YHGT](/sequence-files/IGVFFI8709YHGT/), [IGVFFI4969WOSK](/sequence-files/IGVFFI4969WOSK/), [IGVFFI5047TUYF](/sequence-files/IGVFFI5047TUYF/), [IGVFFI3990NIHL](/sequence-files/IGVFFI3990NIHL/), [IGVFFI4044QNPW](/sequence-files/IGVFFI4044QNPW/), [IGVFFI2681LSZL](/sequence-files/IGVFFI2681LSZL/), [IGVFFI3391TJFU](/sequence-files/IGVFFI3391TJFU/), [IGVFFI9758AKZA](/sequence-files/IGVFFI9758AKZA/), [IGVFFI2054FBDI](/sequence-files/IGVFFI2054FBDI/), [IGVFFI0889VGER](/sequence-files/IGVFFI0889VGER/), [IGVFFI4271QQCQ](/sequence-files/IGVFFI4271QQCQ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS6385NQQG/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS6385NQQG](/measurement-sets/IGVFDS6385NQQG/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS6385NQQG/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS4103BJLT/",
"accession": "IGVFDS4103BJLT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-THP1-PE2_Exp4_NegControl_AmpliconSequencing"
],
"status": "preview"
}
],
"control_for": [],
"creation_timestamp": "2024-11-25T23:52:05.149619+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI3062VSUU/",
"accession": "IGVFFI3062VSUU",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:09:05.107773+00:00",
"file_format": "fastq",
"file_size": 15994540,
"href": "/sequence-files/IGVFFI3062VSUU/@@download/IGVFFI3062VSUU.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/27af7749-e974-41a4-bbd0-c38e9c8a38f5/IGVFFI3062VSUU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep1_S415_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6916VOCL/",
"accession": "IGVFFI6916VOCL",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:18:14.696029+00:00",
"file_format": "fastq",
"file_size": 16327203,
"href": "/sequence-files/IGVFFI6916VOCL/@@download/IGVFFI6916VOCL.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/aa4abffb-a79a-423d-ab75-f0e681efd216/IGVFFI6916VOCL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep7_S421_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5052ZFQL/",
"accession": "IGVFFI5052ZFQL",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:21:42.028534+00:00",
"file_format": "fastq",
"file_size": 15354165,
"href": "/sequence-files/IGVFFI5052ZFQL/@@download/IGVFFI5052ZFQL.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ad3f56c0-43a8-4da3-91ba-9c32b20257c4/IGVFFI5052ZFQL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep10_S424_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0444WJCP/",
"accession": "IGVFFI0444WJCP",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:15:54.326616+00:00",
"file_format": "fastq",
"file_size": 16033696,
"href": "/sequence-files/IGVFFI0444WJCP/@@download/IGVFFI0444WJCP.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/afa06c0b-e036-46c5-b874-7ff34e92bbd9/IGVFFI0444WJCP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep5_S419_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3245ISFR/",
"accession": "IGVFFI3245ISFR",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:14:46.929894+00:00",
"file_format": "fastq",
"file_size": 17064648,
"href": "/sequence-files/IGVFFI3245ISFR/@@download/IGVFFI3245ISFR.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/34be570e-bcf9-434d-9e6f-b19be65644b8/IGVFFI3245ISFR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep4_S418_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9121UYOA/",
"accession": "IGVFFI9121UYOA",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:19:22.437444+00:00",
"file_format": "fastq",
"file_size": 17480146,
"href": "/sequence-files/IGVFFI9121UYOA/@@download/IGVFFI9121UYOA.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/23619ff1-140f-4c50-ba94-e6be0de22018/IGVFFI9121UYOA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep8_S422_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9252MKIR/",
"accession": "IGVFFI9252MKIR",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:20:33.335821+00:00",
"file_format": "fastq",
"file_size": 19760814,
"href": "/sequence-files/IGVFFI9252MKIR/@@download/IGVFFI9252MKIR.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/da3b7110-7242-4b2f-bbf8-22ce851e5900/IGVFFI9252MKIR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep9_S423_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1227TPAP/",
"accession": "IGVFFI1227TPAP",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep2_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:11:35.533465+00:00",
"file_format": "fastq",
"file_size": 16690370,
"href": "/sequence-files/IGVFFI1227TPAP/@@download/IGVFFI1227TPAP.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/5bb233db-d4af-4bad-8c5f-c51431ce5f76/IGVFFI1227TPAP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep2_S416_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7998UZPZ/",
"accession": "IGVFFI7998UZPZ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep3_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:13:34.642082+00:00",
"file_format": "fastq",
"file_size": 15804382,
"href": "/sequence-files/IGVFFI7998UZPZ/@@download/IGVFFI7998UZPZ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ec1ed103-025f-456d-bd79-0babd58aeb08/IGVFFI7998UZPZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep3_S417_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4274HPXV/",
"accession": "IGVFFI4274HPXV",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep11_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:22:53.723212+00:00",
"file_format": "fastq",
"file_size": 14462619,
"href": "/sequence-files/IGVFFI4274HPXV/@@download/IGVFFI4274HPXV.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/7b283be5-33ba-4c27-bf40-9279e931351e/IGVFFI4274HPXV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep11_S425_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6509FFWS/",
"accession": "IGVFFI6509FFWS",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep12_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:24:03.111230+00:00",
"file_format": "fastq",
"file_size": 15776190,
"href": "/sequence-files/IGVFFI6509FFWS/@@download/IGVFFI6509FFWS.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/9e018cf7-25f9-4363-86ed-1a7692d4a93a/IGVFFI6509FFWS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep12_S426_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8121QUML/",
"accession": "IGVFFI8121QUML",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T06:17:03.717109+00:00",
"file_format": "fastq",
"file_size": 15943889,
"href": "/sequence-files/IGVFFI8121QUML/@@download/IGVFFI8121QUML.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/0c5db088-09cb-47db-a0b6-6005a8ca25af/IGVFFI8121QUML.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep6_S420_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0874ELLJ/",
"accession": "IGVFFI0874ELLJ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep6_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:20:27.119482+00:00",
"file_format": "fastq",
"file_size": 18314848,
"href": "/sequence-files/IGVFFI0874ELLJ/@@download/IGVFFI0874ELLJ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/9045ddfe-b04e-4949-88c2-f465bddbd1ce/IGVFFI0874ELLJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep6_S420_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9652TOTI/",
"accession": "IGVFFI9652TOTI",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:26:16.696800+00:00",
"file_format": "fastq",
"file_size": 17746179,
"href": "/sequence-files/IGVFFI9652TOTI/@@download/IGVFFI9652TOTI.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/4fc70fcb-988c-4cd5-a2a0-437ee9540034/IGVFFI9652TOTI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep10_S424_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1484OTDY/",
"accession": "IGVFFI1484OTDY",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep9_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:24:49.706623+00:00",
"file_format": "fastq",
"file_size": 22926339,
"href": "/sequence-files/IGVFFI1484OTDY/@@download/IGVFFI1484OTDY.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d96a58b1-bb1f-4194-a1d8-865d31918260/IGVFFI1484OTDY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep9_S423_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6376ACFI/",
"accession": "IGVFFI6376ACFI",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep4_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T11:55:24.430063+00:00",
"file_format": "fastq",
"file_size": 6098746,
"href": "/sequence-files/IGVFFI6376ACFI/@@download/IGVFFI6376ACFI.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d188facb-a638-48c4-b1fe-50fb9d99c0ac/IGVFFI6376ACFI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep4_S418_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6776FIUQ/",
"accession": "IGVFFI6776FIUQ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:02:26.860856+00:00",
"file_format": "fastq",
"file_size": 6438461,
"href": "/sequence-files/IGVFFI6776FIUQ/@@download/IGVFFI6776FIUQ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1399770d-c1c1-442f-999f-b118fcb5db90/IGVFFI6776FIUQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep7_S421_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4896WCJP/",
"accession": "IGVFFI4896WCJP",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep5_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:19:01.595790+00:00",
"file_format": "fastq",
"file_size": 18592085,
"href": "/sequence-files/IGVFFI4896WCJP/@@download/IGVFFI4896WCJP.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ae4ac820-b2f5-4ed1-b68b-20f7acdcd754/IGVFFI4896WCJP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep5_S419_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4775TOVJ/",
"accession": "IGVFFI4775TOVJ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep1_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:12:21.956911+00:00",
"file_format": "fastq",
"file_size": 18878569,
"href": "/sequence-files/IGVFFI4775TOVJ/@@download/IGVFFI4775TOVJ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/f1aa765b-92f2-45c8-bb3f-975b5e1b9c45/IGVFFI4775TOVJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep1_S415_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8229EFSH/",
"accession": "IGVFFI8229EFSH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:23:21.243887+00:00",
"file_format": "fastq",
"file_size": 19937123,
"href": "/sequence-files/IGVFFI8229EFSH/@@download/IGVFFI8229EFSH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1bf80b76-7547-4b35-a7a7-2b57c603eb8e/IGVFFI8229EFSH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep8_S422_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5055OLYZ/",
"accession": "IGVFFI5055OLYZ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:16:14.825030+00:00",
"file_format": "fastq",
"file_size": 18119380,
"href": "/sequence-files/IGVFFI5055OLYZ/@@download/IGVFFI5055OLYZ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/4ab7b041-bca0-4753-b2c5-6415a857d5b9/IGVFFI5055OLYZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep3_S417_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6291GNEN/",
"accession": "IGVFFI6291GNEN",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:17:36.710918+00:00",
"file_format": "fastq",
"file_size": 19562071,
"href": "/sequence-files/IGVFFI6291GNEN/@@download/IGVFFI6291GNEN.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/6235c019-e926-41a0-8064-520807178e7e/IGVFFI6291GNEN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep4_S418_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3676ZABW/",
"accession": "IGVFFI3676ZABW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep2_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:14:16.604252+00:00",
"file_format": "fastq",
"file_size": 19366677,
"href": "/sequence-files/IGVFFI3676ZABW/@@download/IGVFFI3676ZABW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/bdcd9350-6772-4a10-b3d2-d72470b78628/IGVFFI3676ZABW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep2_S416_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3144EDLY/",
"accession": "IGVFFI3144EDLY",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:27:49.614080+00:00",
"file_format": "fastq",
"file_size": 16647012,
"href": "/sequence-files/IGVFFI3144EDLY/@@download/IGVFFI3144EDLY.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/e3833ca1-da78-41c7-8768-26d8afdcfeb0/IGVFFI3144EDLY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep11_S425_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0305EJJX/",
"accession": "IGVFFI0305EJJX",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:21:52.158027+00:00",
"file_format": "fastq",
"file_size": 18836149,
"href": "/sequence-files/IGVFFI0305EJJX/@@download/IGVFFI0305EJJX.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/5119b9e8-9d7b-43eb-9f80-aede1250894e/IGVFFI0305EJJX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep7_S421_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0013OKBE/",
"accession": "IGVFFI0013OKBE",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep12_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T08:29:24.422680+00:00",
"file_format": "fastq",
"file_size": 18245467,
"href": "/sequence-files/IGVFFI0013OKBE/@@download/IGVFFI0013OKBE.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1a92ec9e-ab69-4241-9997-d3e3be9ca4a9/IGVFFI0013OKBE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep12_S426_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8854FRLI/",
"accession": "IGVFFI8854FRLI",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:00:02.573403+00:00",
"file_format": "fastq",
"file_size": 6849509,
"href": "/sequence-files/IGVFFI8854FRLI/@@download/IGVFFI8854FRLI.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1ba6d3bc-d118-4baf-99a2-9cfac17caa48/IGVFFI8854FRLI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep6_S420_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5483IFWV/",
"accession": "IGVFFI5483IFWV",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep8_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:04:44.291156+00:00",
"file_format": "fastq",
"file_size": 6947752,
"href": "/sequence-files/IGVFFI5483IFWV/@@download/IGVFFI5483IFWV.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/55ad8c9f-6f34-4105-9850-6dea6e6ead74/IGVFFI5483IFWV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep8_S422_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2972AIYT/",
"accession": "IGVFFI2972AIYT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep5_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T11:57:41.011129+00:00",
"file_format": "fastq",
"file_size": 6699391,
"href": "/sequence-files/IGVFFI2972AIYT/@@download/IGVFFI2972AIYT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/560a0d8e-0aff-4bdd-a776-cbe8e87a7aec/IGVFFI2972AIYT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep5_S419_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7160XNOT/",
"accession": "IGVFFI7160XNOT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T11:46:06.800238+00:00",
"file_format": "fastq",
"file_size": 6812131,
"href": "/sequence-files/IGVFFI7160XNOT/@@download/IGVFFI7160XNOT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d6a5830c-6424-4726-aad6-b877620e8796/IGVFFI7160XNOT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep1_S415_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6363OTAR/",
"accession": "IGVFFI6363OTAR",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:09:32.746493+00:00",
"file_format": "fastq",
"file_size": 6155609,
"href": "/sequence-files/IGVFFI6363OTAR/@@download/IGVFFI6363OTAR.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1d19ac6a-4fcb-42cc-b2e6-ad23e25bc8ae/IGVFFI6363OTAR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep10_S424_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4269HRKU/",
"accession": "IGVFFI4269HRKU",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep12_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:14:18.846640+00:00",
"file_format": "fastq",
"file_size": 5912551,
"href": "/sequence-files/IGVFFI4269HRKU/@@download/IGVFFI4269HRKU.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/7a3a04f6-4e0a-4f22-ad5f-dfb0aa006c5d/IGVFFI4269HRKU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep12_S426_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2700HWDE/",
"accession": "IGVFFI2700HWDE",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep3_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T11:53:00.660982+00:00",
"file_format": "fastq",
"file_size": 5844803,
"href": "/sequence-files/IGVFFI2700HWDE/@@download/IGVFFI2700HWDE.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/96c52d00-bbed-42f5-b929-d063463e9c1f/IGVFFI2700HWDE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep3_S417_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5249TDOB/",
"accession": "IGVFFI5249TDOB",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep9_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:07:11.724590+00:00",
"file_format": "fastq",
"file_size": 7563261,
"href": "/sequence-files/IGVFFI5249TDOB/@@download/IGVFFI5249TDOB.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/400305df-4d97-4013-824c-122b4f32ed40/IGVFFI5249TDOB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep9_S423_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4399DQMR/",
"accession": "IGVFFI4399DQMR",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep11_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T12:11:59.455123+00:00",
"file_format": "fastq",
"file_size": 6375207,
"href": "/sequence-files/IGVFFI4399DQMR/@@download/IGVFFI4399DQMR.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/e96b7204-120d-4bf0-b9cd-ca6fab537687/IGVFFI4399DQMR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep11_S425_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5518THVT/",
"accession": "IGVFFI5518THVT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep1_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T15:40:57.376967+00:00",
"file_format": "fastq",
"file_size": 5619848,
"href": "/sequence-files/IGVFFI5518THVT/@@download/IGVFFI5518THVT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/6ccb99f3-fc92-413f-916b-1078cc322a6e/IGVFFI5518THVT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep1_S415_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9267SBCR/",
"accession": "IGVFFI9267SBCR",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T11:49:28.387057+00:00",
"file_format": "fastq",
"file_size": 6795611,
"href": "/sequence-files/IGVFFI9267SBCR/@@download/IGVFFI9267SBCR.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d8ac39a4-5731-453d-adf5-008d225e0971/IGVFFI9267SBCR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep2_S416_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8709YHGT/",
"accession": "IGVFFI8709YHGT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep3_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T15:47:55.193936+00:00",
"file_format": "fastq",
"file_size": 5600740,
"href": "/sequence-files/IGVFFI8709YHGT/@@download/IGVFFI8709YHGT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ffc31036-7e50-41f8-a8f8-fd4043e414c3/IGVFFI8709YHGT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep3_S417_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4969WOSK/",
"accession": "IGVFFI4969WOSK",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep4_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T15:50:20.900567+00:00",
"file_format": "fastq",
"file_size": 5937688,
"href": "/sequence-files/IGVFFI4969WOSK/@@download/IGVFFI4969WOSK.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d520dfaa-bb09-4cb6-aa74-ecd63dddbecf/IGVFFI4969WOSK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep4_S418_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5047TUYF/",
"accession": "IGVFFI5047TUYF",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep7_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T15:57:20.102414+00:00",
"file_format": "fastq",
"file_size": 5908624,
"href": "/sequence-files/IGVFFI5047TUYF/@@download/IGVFFI5047TUYF.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/84bed00a-a9c1-49c3-bd85-ce014f4626e8/IGVFFI5047TUYF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep7_S421_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3990NIHL/",
"accession": "IGVFFI3990NIHL",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep5_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T15:52:42.486276+00:00",
"file_format": "fastq",
"file_size": 5763804,
"href": "/sequence-files/IGVFFI3990NIHL/@@download/IGVFFI3990NIHL.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ef116bcf-98fa-4ef1-bcc6-46eb32083afc/IGVFFI3990NIHL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep5_S419_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4044QNPW/",
"accession": "IGVFFI4044QNPW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep9_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:02:23.176799+00:00",
"file_format": "fastq",
"file_size": 7068084,
"href": "/sequence-files/IGVFFI4044QNPW/@@download/IGVFFI4044QNPW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/7d0788bb-b8aa-4d04-984c-dc71036d9e4a/IGVFFI4044QNPW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep9_S423_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2681LSZL/",
"accession": "IGVFFI2681LSZL",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep12_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:09:40.831402+00:00",
"file_format": "fastq",
"file_size": 5531208,
"href": "/sequence-files/IGVFFI2681LSZL/@@download/IGVFFI2681LSZL.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/08770cd0-8baa-4f27-915a-480da3756225/IGVFFI2681LSZL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep12_S426_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3391TJFU/",
"accession": "IGVFFI3391TJFU",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T15:59:50.152348+00:00",
"file_format": "fastq",
"file_size": 6155192,
"href": "/sequence-files/IGVFFI3391TJFU/@@download/IGVFFI3391TJFU.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/e9d0b00c-859a-4dfd-8b03-84b9a562b54b/IGVFFI3391TJFU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep8_S422_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9758AKZA/",
"accession": "IGVFFI9758AKZA",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:07:16.570354+00:00",
"file_format": "fastq",
"file_size": 5377762,
"href": "/sequence-files/IGVFFI9758AKZA/@@download/IGVFFI9758AKZA.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/0644f879-03cd-4144-9d43-72546bf2f681/IGVFFI9758AKZA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep11_S425_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2054FBDI/",
"accession": "IGVFFI2054FBDI",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T15:44:31.533494+00:00",
"file_format": "fastq",
"file_size": 5890346,
"href": "/sequence-files/IGVFFI2054FBDI/@@download/IGVFFI2054FBDI.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/feb34075-06df-4d77-8f70-c7c80041b35a/IGVFFI2054FBDI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep2_S416_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0889VGER/",
"accession": "IGVFFI0889VGER",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep6_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T15:54:59.123626+00:00",
"file_format": "fastq",
"file_size": 5767311,
"href": "/sequence-files/IGVFFI0889VGER/@@download/IGVFFI0889VGER.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/9085e173-40bb-4977-b49c-60d500126c25/IGVFFI0889VGER.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep6_S420_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4271QQCQ/",
"accession": "IGVFFI4271QQCQ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T16:04:48.743950+00:00",
"file_format": "fastq",
"file_size": 5524489,
"href": "/sequence-files/IGVFFI4271QQCQ/@@download/IGVFFI4271QQCQ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/a364d93c-792c-476c-8eb8-15bd47931895/IGVFFI4271QQCQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep1-FFrep1-BinA-PCRrep10_S424_I2_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS4833ZRTZ/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM4797INCW/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4797INCW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep1-FFrep1-BinA"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS4955GEYO/",
"accession": "IGVFDS4955GEYO",
"file_set_type": "guide library",
"status": "preview",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "preview",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "preview",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2024-11-26T06:09:05.107773+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "e3bb46e5-1f00-4998-82b6-d3bcce970abb"
}