{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS6385JXFZ/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS6385JXFZ",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-THP1-PE2_Exp3_NegControl_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS6385JXFZ](/measurement-sets/IGVFDS6385JXFZ/) has in progress subobject auxiliary set [IGVFDS7937XRJW](/auxiliary-sets/IGVFDS7937XRJW/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS6385JXFZ/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS6385JXFZ](/measurement-sets/IGVFDS6385JXFZ/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS6385JXFZ/"
},
{
"category": "missing targeted genes",
"detail": "Measurement set [IGVFDS6385JXFZ](/measurement-sets/IGVFDS6385JXFZ/) has no `targeted_genes`. ChIP-seq and CRISPR flow cytometry assays are expected to specify targeted gene(s).",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_targeted_genes",
"path": "/measurement-sets/IGVFDS6385JXFZ/"
},
{
"category": "missing sequence specification",
"detail": "Auxiliary set [IGVFDS7937XRJW](/auxiliary-sets/IGVFDS7937XRJW/) has sequence file(s): [IGVFFI2531MWIR](/sequence-files/IGVFFI2531MWIR/), [IGVFFI5885NRZK](/sequence-files/IGVFFI5885NRZK/), [IGVFFI1976KVKH](/sequence-files/IGVFFI1976KVKH/), [IGVFFI0570YVWS](/sequence-files/IGVFFI0570YVWS/), [IGVFFI3110VCLU](/sequence-files/IGVFFI3110VCLU/), [IGVFFI1523IDOK](/sequence-files/IGVFFI1523IDOK/), [IGVFFI5106AIQV](/sequence-files/IGVFFI5106AIQV/), [IGVFFI9374DHPW](/sequence-files/IGVFFI9374DHPW/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/auxiliary-sets/IGVFDS7937XRJW/"
}
],
"WARNING": [
{
"category": "missing sequencing kit",
"detail": "Auxiliary set [IGVFDS7937XRJW](/auxiliary-sets/IGVFDS7937XRJW/) has sequence file(s) [IGVFFI2531MWIR](/sequence-files/IGVFFI2531MWIR/), [IGVFFI5885NRZK](/sequence-files/IGVFFI5885NRZK/), [IGVFFI1976KVKH](/sequence-files/IGVFFI1976KVKH/), [IGVFFI0570YVWS](/sequence-files/IGVFFI0570YVWS/), [IGVFFI3110VCLU](/sequence-files/IGVFFI3110VCLU/), [IGVFFI1523IDOK](/sequence-files/IGVFFI1523IDOK/), [IGVFFI5106AIQV](/sequence-files/IGVFFI5106AIQV/), [IGVFFI9374DHPW](/sequence-files/IGVFFI9374DHPW/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 40,
"level_name": "WARNING",
"name": "audit_inconsistent_sequencing_kit",
"path": "/auxiliary-sets/IGVFDS7937XRJW/"
},
{
"category": "missing analysis",
"detail": "Auxiliary set [IGVFDS7937XRJW](/auxiliary-sets/IGVFDS7937XRJW/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_file_set_for",
"path": "/auxiliary-sets/IGVFDS7937XRJW/"
}
]
},
"auxiliary_sets": [
{
"@id": "/auxiliary-sets/IGVFDS7937XRJW/",
"accession": "IGVFDS7937XRJW",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-THP1-PE2_Exp3_NegControl_AmpliconSequencing_AuxiliarySet"
],
"file_set_type": "variant sequencing"
}
],
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_for": [
{
"@id": "/measurement-sets/IGVFDS2641ALJQ/",
"accession": "IGVFDS2641ALJQ",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9276HGOM/",
"accession": "IGVFDS9276HGOM",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6214RDRM/",
"accession": "IGVFDS6214RDRM",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep1-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0881DJJG/",
"accession": "IGVFDS0881DJJG",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep2-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS2443IKFM/",
"accession": "IGVFDS2443IKFM",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep2-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5585HGSK/",
"accession": "IGVFDS5585HGSK",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep3-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7205UOTV/",
"accession": "IGVFDS7205UOTV",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5416ECKJ/",
"accession": "IGVFDS5416ECKJ",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5439ZLTA/",
"accession": "IGVFDS5439ZLTA",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep2-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3964BHOX/",
"accession": "IGVFDS3964BHOX",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0634BYKS/",
"accession": "IGVFDS0634BYKS",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep1-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS2067RNFB/",
"accession": "IGVFDS2067RNFB",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep2-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3851CVMG/",
"accession": "IGVFDS3851CVMG",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep2-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6859ZHTQ/",
"accession": "IGVFDS6859ZHTQ",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4786QNDV/",
"accession": "IGVFDS4786QNDV",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7692AEEW/",
"accession": "IGVFDS7692AEEW",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6538ISBQ/",
"accession": "IGVFDS6538ISBQ",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep1-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS8067PUZX/",
"accession": "IGVFDS8067PUZX",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep2-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS8138GVAT/",
"accession": "IGVFDS8138GVAT",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4371VPAL/",
"accession": "IGVFDS4371VPAL",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9920OIUA/",
"accession": "IGVFDS9920OIUA",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3442RJBW/",
"accession": "IGVFDS3442RJBW",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS8377HOWJ/",
"accession": "IGVFDS8377HOWJ",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS2963KTVM/",
"accession": "IGVFDS2963KTVM",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep1-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7093IAOE/",
"accession": "IGVFDS7093IAOE",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6731AKUS/",
"accession": "IGVFDS6731AKUS",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7472ZHUE/",
"accession": "IGVFDS7472ZHUE",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4043NWWM/",
"accession": "IGVFDS4043NWWM",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7434URBG/",
"accession": "IGVFDS7434URBG",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7400NQET/",
"accession": "IGVFDS7400NQET",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9818UYJH/",
"accession": "IGVFDS9818UYJH",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0126OPKX/",
"accession": "IGVFDS0126OPKX",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5374LMRK/",
"accession": "IGVFDS5374LMRK",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0735XAQF/",
"accession": "IGVFDS0735XAQF",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6066LBCV/",
"accession": "IGVFDS6066LBCV",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1293ORGQ/",
"accession": "IGVFDS1293ORGQ",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3845OXSE/",
"accession": "IGVFDS3845OXSE",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6498KFQL/",
"accession": "IGVFDS6498KFQL",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1711PRHO/",
"accession": "IGVFDS1711PRHO",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4701EMZA/",
"accession": "IGVFDS4701EMZA",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep1-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS8830XMQR/",
"accession": "IGVFDS8830XMQR",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep3-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3198NALA/",
"accession": "IGVFDS3198NALA",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1482MIEF/",
"accession": "IGVFDS1482MIEF",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep1-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3243KYES/",
"accession": "IGVFDS3243KYES",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep2-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6112CFBJ/",
"accession": "IGVFDS6112CFBJ",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0182ZKUF/",
"accession": "IGVFDS0182ZKUF",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6367YJDA/",
"accession": "IGVFDS6367YJDA",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep3-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS1696YMUM/",
"accession": "IGVFDS1696YMUM",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep1-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS2167TBGK/",
"accession": "IGVFDS2167TBGK",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5937NTSM/",
"accession": "IGVFDS5937NTSM",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep1-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9844CWDW/",
"accession": "IGVFDS9844CWDW",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep1-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9005ISSR/",
"accession": "IGVFDS9005ISSR",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0410OHWU/",
"accession": "IGVFDS0410OHWU",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep3-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS9444IQCJ/",
"accession": "IGVFDS9444IQCJ",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep2-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3899ANMJ/",
"accession": "IGVFDS3899ANMJ",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0300ELGK/",
"accession": "IGVFDS0300ELGK",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep2-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0286JWIW/",
"accession": "IGVFDS0286JWIW",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep3-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4722YXGE/",
"accession": "IGVFDS4722YXGE",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep2-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0968GSSQ/",
"accession": "IGVFDS0968GSSQ",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep2-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4716SNKJ/",
"accession": "IGVFDS4716SNKJ",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep3-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6880HZFB/",
"accession": "IGVFDS6880HZFB",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep2-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS3659HSOV/",
"accession": "IGVFDS3659HSOV",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7365REMW/",
"accession": "IGVFDS7365REMW",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep2-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS0592EWPO/",
"accession": "IGVFDS0592EWPO",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep2-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5961WERM/",
"accession": "IGVFDS5961WERM",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6756WKPU/",
"accession": "IGVFDS6756WKPU",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep1-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS7530NWPC/",
"accession": "IGVFDS7530NWPC",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep1-BinC_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6624WHBQ/",
"accession": "IGVFDS6624WHBQ",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep1-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS8949ZDBE/",
"accession": "IGVFDS8949ZDBE",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep1-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5001PJTX/",
"accession": "IGVFDS5001PJTX",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep3-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS6473LUNY/",
"accession": "IGVFDS6473LUNY",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-FACS_Input_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5927FYNR/",
"accession": "IGVFDS5927FYNR",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep4-FFrep1-BinB_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5714UWEJ/",
"accession": "IGVFDS5714UWEJ",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinA_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS2504PFZO/",
"accession": "IGVFDS2504PFZO",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinD_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS8032KCGK/",
"accession": "IGVFDS8032KCGK",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinF_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS4945KDNO/",
"accession": "IGVFDS4945KDNO",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinE_AmpliconSequencing"
]
},
{
"@id": "/measurement-sets/IGVFDS5910HARH/",
"accession": "IGVFDS5910HARH",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC_AmpliconSequencing"
]
}
],
"creation_timestamp": "2023-11-30T22:45:52.270958+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"file_set_type": "experimental data",
"files": [],
"input_file_set_for": [
"/analysis-sets/IGVFDS5056OAGR/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set.",
"preferred_assay_title": "Variant FlowFISH",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"release_timestamp": "2023-12-20T23:09:23.259911+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM2216EFEX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2216EFEX",
"aliases": [
"jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-THP1-PE2_Exp3_NegControl"
],
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens",
"taxa": "Homo sapiens"
}
],
"schema_version": "21",
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2023-12-05T18:29:33.770024+00:00",
"summary": "Variant FlowFISH",
"uuid": "761366e4-7db5-4223-95d7-6621b28b59d3"
}