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MeasurementSet
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IGVFDS6383WAZV
IGVFDS6383WAZV
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Assay Term
single-cell RNA sequencing assay
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 181)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scRNA Lib 439
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
6 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0472USWP
fastq
reads
R2
900
Read 2
IGVFFI8369XPKR
Illumina NovaSeq X
22773CLT3
351 MB
Jason Buenrostro, Broad
validated
IGVFFI1716TUNH
fastq
reads
I1
858
Barcode index
IGVFFI2663SENL
Illumina NovaSeq X
22773CLT3
301 MB
Jason Buenrostro, Broad
validated
IGVFFI7236TMLT
fastq
reads
R1
900
Read 1
IGVFFI8369XPKR
Illumina NovaSeq X
22773CLT3
710 MB
Jason Buenrostro, Broad
validated
IGVFFI8769NPAH
fastq
reads
R1
858
Read 1
IGVFFI2663SENL
Illumina NovaSeq X
22773CLT3
822 MB
Jason Buenrostro, Broad
validated
IGVFFI9422VSPV
fastq
reads
I1
900
Barcode index
IGVFFI8369XPKR
Illumina NovaSeq X
22773CLT3
264 MB
Jason Buenrostro, Broad
validated
IGVFFI9528BSDI
fastq
reads
R2
858
Read 2
IGVFFI2663SENL
Illumina NovaSeq X
22773CLT3
411 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM6809WZDC
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 181)
Donors
100 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0143YSWQ
buenrostro-bernstein:Donor 1860
unspecified
Homo sapiens
IGVFDO0144AKUR
buenrostro-bernstein:Donor 1850
unspecified
Homo sapiens
IGVFDO0166JLWT
buenrostro-bernstein:Donor 1816
unspecified
Homo sapiens
IGVFDO0186ZZOL
buenrostro-bernstein:Donor 1862
unspecified
Homo sapiens
IGVFDO0233FJJF
buenrostro-bernstein:Donor 1834
unspecified
Homo sapiens
IGVFDO0273LMQQ
buenrostro-bernstein:Donor 1876
unspecified
Homo sapiens
IGVFDO0285FFEG
buenrostro-bernstein:Donor 1828
unspecified
Homo sapiens
IGVFDO0392YIJG
buenrostro-bernstein:Donor 1892
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0452ROLO
buenrostro-bernstein:Donor 1867
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6089BPPE
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:scATAC Lib 454
Jason Buenrostro, Broad