IGVFDS6373YBDI

1{
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10    "aliases": [
11        "igvf:corces_measurementSet_RP011_G8_RNA"
12    ],
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15        "assay_slims": [
16            "gene expression"
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18        "status": "released",
19        "term_name": "single-nucleus RNA sequencing assay"
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689            {
690                "category": "missing sequence specification",
691                "detail": "Measurement set [IGVFDS6373YBDI](/measurement-sets/IGVFDS6373YBDI/) has sequence file(s): [IGVFFI0806LKWG](/sequence-files/IGVFFI0806LKWG/), [IGVFFI2294QVKR](/sequence-files/IGVFFI2294QVKR/), [IGVFFI2722FGDA](/sequence-files/IGVFFI2722FGDA/), [IGVFFI7174PVSW](/sequence-files/IGVFFI7174PVSW/), [IGVFFI0902SZYK](/sequence-files/IGVFFI0902SZYK/), [IGVFFI1772GOIA](/sequence-files/IGVFFI1772GOIA/), [IGVFFI5386VUCS](/sequence-files/IGVFFI5386VUCS/), [IGVFFI7520VRJO](/sequence-files/IGVFFI7520VRJO/), [IGVFFI4072DTWQ](/sequence-files/IGVFFI4072DTWQ/), [IGVFFI9549XTSZ](/sequence-files/IGVFFI9549XTSZ/), [IGVFFI4083NBJF](/sequence-files/IGVFFI4083NBJF/), [IGVFFI1847FHQZ](/sequence-files/IGVFFI1847FHQZ/), [IGVFFI8586EKKI](/sequence-files/IGVFFI8586EKKI/), [IGVFFI9215NFYK](/sequence-files/IGVFFI9215NFYK/), [IGVFFI7699ZKPI](/sequence-files/IGVFFI7699ZKPI/), [IGVFFI3813EKVE](/sequence-files/IGVFFI3813EKVE/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
692                "level": 50,
693                "level_name": "NOT_COMPLIANT",
694                "name": "audit_missing_seqspec",
695                "path": "/measurement-sets/IGVFDS6373YBDI/"
696            },
697            {
698                "category": "missing strand specificity",
699                "detail": "Measurement set [IGVFDS6373YBDI](/measurement-sets/IGVFDS6373YBDI/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
700                "level": 50,
701                "level_name": "NOT_COMPLIANT",
702                "name": "audit_missing_strand_specificity",
703                "path": "/measurement-sets/IGVFDS6373YBDI/"
704            }
705        ],
706        "WARNING": [
707            {
708                "category": "missing analysis",
709                "detail": "Measurement set [IGVFDS6373YBDI](/measurement-sets/IGVFDS6373YBDI/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
710                "level": 40,
711                "level_name": "WARNING",
712                "name": "audit_input_for",
713                "path": "/measurement-sets/IGVFDS6373YBDI/"
714            }
715        ]
716    },
717    "award": {
718        "@id": "/awards/HG012076/",
719        "component": "mapping",
720        "contact_pi": {
721            "@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
722            "title": "Ansuman Satpathy"
723        },
724        "title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
725    },
726    "control_for": [],
727    "controlled_access": false,
728    "creation_timestamp": "2025-03-19T21:42:29.605419+00:00",
729    "data_use_limitation_summaries": [
730        "No limitations"
731    ],
732    "donors": [
733        {
734            "@id": "/human-donors/IGVFDO3501RYHX/",
735            "accession": "IGVFDO3501RYHX",
736            "aliases": [
737                "igvf:corces_donor_BANN1959"
738            ],
739            "sex": "male",
740            "status": "preview",
741            "taxa": "Homo sapiens"
742        },
743        {
744            "@id": "/human-donors/IGVFDO7227BIXW/",
745            "accession": "IGVFDO7227BIXW",
746            "aliases": [
747                "igvf:corces_donor_BANN1614"
748            ],
749            "sex": "male",
750            "status": "preview",
751            "taxa": "Homo sapiens"
752        },
753        {
754            "@id": "/human-donors/IGVFDO7649CIGW/",
755            "accession": "IGVFDO7649CIGW",
756            "aliases": [
757                "igvf:corces_donor_BANN9902"
758            ],
759            "sex": "female",
760            "status": "preview",
761            "taxa": "Homo sapiens"
762        },
763        {
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765            "accession": "IGVFDO2028IGVN",
766            "aliases": [
767                "igvf:corces_donor_BANN1256"
768            ],
769            "sex": "female",
770            "status": "preview",
771            "taxa": "Homo sapiens"
772        },
773        {
774            "@id": "/human-donors/IGVFDO0773NPOH/",
775            "accession": "IGVFDO0773NPOH",
776            "aliases": [
777                "igvf:corces_donor_BANN0560"
778            ],
779            "sex": "male",
780            "status": "preview",
781            "taxa": "Homo sapiens"
782        },
783        {
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785            "accession": "IGVFDO8670MHXE",
786            "aliases": [
787                "igvf:corces_donor_BANN0874"
788            ],
789            "sex": "female",
790            "status": "preview",
791            "taxa": "Homo sapiens"
792        },
793        {
794            "@id": "/human-donors/IGVFDO2928PSUK/",
795            "accession": "IGVFDO2928PSUK",
796            "aliases": [
797                "igvf:corces_donor_BANN0950"
798            ],
799            "sex": "male",
800            "status": "preview",
801            "taxa": "Homo sapiens"
802        },
803        {
804            "@id": "/human-donors/IGVFDO1797DNPW/",
805            "accession": "IGVFDO1797DNPW",
806            "aliases": [
807                "igvf:corces_donor_BANN1827"
808            ],
809            "sex": "male",
810            "status": "preview",
811            "taxa": "Homo sapiens"
812        },
813        {
814            "@id": "/human-donors/IGVFDO7720JNYZ/",
815            "accession": "IGVFDO7720JNYZ",
816            "aliases": [
817                "igvf:corces_donor_BANN0438"
818            ],
819            "sex": "female",
820            "status": "preview",
821            "taxa": "Homo sapiens"
822        },
823        {
824            "@id": "/human-donors/IGVFDO9247BEUS/",
825            "accession": "IGVFDO9247BEUS",
826            "aliases": [
827                "igvf:corces_donor_BANN2149"
828            ],
829            "sex": "male",
830            "status": "preview",
831            "taxa": "Homo sapiens"
832        },
833        {
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835            "accession": "IGVFDO5228HTJC",
836            "aliases": [
837                "igvf:corces_donor_BANN1839"
838            ],
839            "sex": "female",
840            "status": "preview",
841            "taxa": "Homo sapiens"
842        },
843        {
844            "@id": "/human-donors/IGVFDO1997RFPJ/",
845            "accession": "IGVFDO1997RFPJ",
846            "aliases": [
847                "igvf:corces_donor_BANN1340"
848            ],
849            "sex": "male",
850            "status": "preview",
851            "taxa": "Homo sapiens"
852        },
853        {
854            "@id": "/human-donors/IGVFDO7186XJLL/",
855            "accession": "IGVFDO7186XJLL",
856            "aliases": [
857                "igvf:corces_donor_BANN1639"
858            ],
859            "sex": "male",
860            "status": "preview",
861            "taxa": "Homo sapiens"
862        },
863        {
864            "@id": "/human-donors/IGVFDO0698ZMAQ/",
865            "accession": "IGVFDO0698ZMAQ",
866            "aliases": [
867                "igvf:corces_donor_BANN1569"
868            ],
869            "sex": "male",
870            "status": "preview",
871            "taxa": "Homo sapiens"
872        },
873        {
874            "@id": "/human-donors/IGVFDO3497MBPK/",
875            "accession": "IGVFDO3497MBPK",
876            "aliases": [
877                "igvf:corces_donor_BANN0002"
878            ],
879            "sex": "male",
880            "status": "preview",
881            "taxa": "Homo sapiens"
882        },
883        {
884            "@id": "/human-donors/IGVFDO1469WVVS/",
885            "accession": "IGVFDO1469WVVS",
886            "aliases": [
887                "igvf:corces_donor_BANN1063"
888            ],
889            "sex": "male",
890            "status": "preview",
891            "taxa": "Homo sapiens"
892        }
893    ],
894    "externally_hosted": false,
895    "file_set_type": "experimental data",
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925            "content_type": "reads",
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1006        },
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1009            "accession": "IGVFFI1772GOIA",
1010            "aliases": [
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1094        },
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1138        },
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1141            "accession": "IGVFFI1847FHQZ",
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1253        "title": "Ryan Corces, Gladstone Institute UCSF"
1254    },
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1256    "onlist_files": [
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1261    "protocols": [
1262        "https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn"
1263    ],
1264    "related_multiome_datasets": [
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1274            "@type": [
1275                "MultiplexedSample",
1276                "Sample",
1277                "Item"
1278            ],
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1280            "aliases": [
1281                "igvf:corces_multiplexedSample_RP011_G8"
1282            ],
1283            "classifications": [
1284                "tissue",
1285                "multiplexed sample"
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1287            "disease_terms": [
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1290                    "status": "in progress",
1291                    "term_name": "mild cognitive impairment"
1292                },
1293                {
1294                    "@id": "/phenotype-terms/DOID_14330/",
1295                    "status": "in progress",
1296                    "term_name": "Parkinson's disease"
1297                },
1298                {
1299                    "@id": "/phenotype-terms/DOID_9246/",
1300                    "status": "in progress",
1301                    "term_name": "cerebral amyloid angiopathy"
1302                },
1303                {
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1305                    "status": "released",
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1307                }
1308            ],
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1321                    "@type": [
1322                        "SampleTerm",
1323                        "OntologyTerm",
1324                        "Item"
1325                    ],
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1329                },
1330                {
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1332                    "@type": [
1333                        "SampleTerm",
1334                        "OntologyTerm",
1335                        "Item"
1336                    ],
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1340                },
1341                {
1342                    "@id": "/sample-terms/UBERON_0002129/",
1343                    "@type": [
1344                        "SampleTerm",
1345                        "OntologyTerm",
1346                        "Item"
1347                    ],
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1350                    "term_name": "cerebellar cortex"
1351                },
1352                {
1353                    "@id": "/sample-terms/UBERON_0002740/",
1354                    "@type": [
1355                        "SampleTerm",
1356                        "OntologyTerm",
1357                        "Item"
1358                    ],
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1362                },
1363                {
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1365                    "@type": [
1366                        "SampleTerm",
1367                        "OntologyTerm",
1368                        "Item"
1369                    ],
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1371                    "summary": "middle temporal gyrus",
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1374            ],
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1377            "taxa": "Homo sapiens",
1378            "treatments": []
1379        }
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1383    "submitted_by": {
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1385        "title": "Ryan Corces"
1386    },
1387    "submitted_files_timestamp": "2025-03-20T17:20:35.185997+00:00",
1388    "summary": "single-nucleus RNA sequencing assay (10x multiome)",
1389    "uuid": "e1eb1afd-8acb-4564-8101-69f480ca4eef"
1390}