IGVFDS6356BAJX

1{
2    "@context": "/terms/",
3    "@id": "/measurement-sets/IGVFDS6356BAJX/",
4    "@type": [
5        "MeasurementSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS6356BAJX",
10    "aliases": [
11        "ali-mortazavi:010_67J_illumina"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0003109/",
15        "assay_slims": [
16            "gene expression"
17        ],
18        "status": "released",
19        "term_name": "single-nucleus RNA sequencing assay"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "missing publication",
25                "detail": "Measurement set [IGVFDS6356BAJX](/measurement-sets/IGVFDS6356BAJX/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_file_set_missing_publication",
29                "path": "/measurement-sets/IGVFDS6356BAJX/"
30            },
31            {
32                "category": "mismatched status",
33                "detail": "Released measurement set [IGVFDS6356BAJX](/measurement-sets/IGVFDS6356BAJX/) has in progress subobject tabular file [IGVFFI4529PWCF](/tabular-files/IGVFFI4529PWCF/).",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_item_status",
37                "path": "/measurement-sets/IGVFDS6356BAJX/"
38            },
39            {
40                "category": "mismatched status",
41                "detail": "Released measurement set [IGVFDS6356BAJX](/measurement-sets/IGVFDS6356BAJX/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_item_status",
45                "path": "/measurement-sets/IGVFDS6356BAJX/"
46            },
47            {
48                "category": "mismatched status",
49                "detail": "Released measurement set [IGVFDS6356BAJX](/measurement-sets/IGVFDS6356BAJX/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_item_status",
53                "path": "/measurement-sets/IGVFDS6356BAJX/"
54            },
55            {
56                "category": "missing publication",
57                "detail": "Multiplexed sample [IGVFSM5918MBLK](/multiplexed-samples/IGVFSM5918MBLK/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
58                "level": 30,
59                "level_name": "INTERNAL_ACTION",
60                "name": "audit_sample_missing_publication",
61                "path": "/multiplexed-samples/IGVFSM5918MBLK/"
62            }
63        ]
64    },
65    "award": {
66        "@id": "/awards/HG012077/",
67        "component": "mapping",
68        "contact_pi": {
69            "@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
70            "title": "Ali Mortazavi"
71        },
72        "title": "Center for Mouse Genomic Variation at Single Cell Resolution"
73    },
74    "barcode_replacement_file": "/tabular-files/IGVFFI4529PWCF/",
75    "control_for": [],
76    "creation_timestamp": "2023-10-13T17:19:42.107415+00:00",
77    "data_use_limitation_summaries": [
78        "no certificate"
79    ],
80    "donors": [
81        {
82            "@id": "/rodent-donors/IGVFDO8904OIIT/",
83            "accession": "IGVFDO8904OIIT",
84            "aliases": [
85                "ali-mortazavi:044_129S1J_10F"
86            ],
87            "sex": "female",
88            "status": "released",
89            "strain_background": "129S1/SvImJ (129)",
90            "taxa": "Mus musculus"
91        },
92        {
93            "@id": "/rodent-donors/IGVFDO6607QZPA/",
94            "accession": "IGVFDO6607QZPA",
95            "aliases": [
96                "ali-mortazavi:050_NZOJ_10F"
97            ],
98            "sex": "female",
99            "status": "released",
100            "strain_background": "NZO/H1LtJ (NZO)",
101            "taxa": "Mus musculus"
102        },
103        {
104            "@id": "/rodent-donors/IGVFDO7957DMLJ/",
105            "accession": "IGVFDO7957DMLJ",
106            "aliases": [
107                "ali-mortazavi:033_AJ_10M"
108            ],
109            "sex": "male",
110            "status": "released",
111            "strain_background": "A/J (AJ)",
112            "taxa": "Mus musculus"
113        },
114        {
115            "@id": "/rodent-donors/IGVFDO7951JDSP/",
116            "accession": "IGVFDO7951JDSP",
117            "aliases": [
118                "ali-mortazavi:026_AJ_10F"
119            ],
120            "sex": "female",
121            "status": "released",
122            "strain_background": "A/J (AJ)",
123            "taxa": "Mus musculus"
124        },
125        {
126            "@id": "/rodent-donors/IGVFDO0813DZTW/",
127            "accession": "IGVFDO0813DZTW",
128            "aliases": [
129                "ali-mortazavi:069_NODJ_10M"
130            ],
131            "sex": "male",
132            "status": "released",
133            "strain_background": "NOD/ShiLtJ (NOD)",
134            "taxa": "Mus musculus"
135        },
136        {
137            "@id": "/rodent-donors/IGVFDO4546RHSG/",
138            "accession": "IGVFDO4546RHSG",
139            "aliases": [
140                "ali-mortazavi:027_AJ_10M"
141            ],
142            "sex": "male",
143            "status": "released",
144            "strain_background": "A/J (AJ)",
145            "taxa": "Mus musculus"
146        },
147        {
148            "@id": "/rodent-donors/IGVFDO9142EUBJ/",
149            "accession": "IGVFDO9142EUBJ",
150            "aliases": [
151                "ali-mortazavi:096_WSBJ_10F"
152            ],
153            "sex": "female",
154            "status": "released",
155            "strain_background": "WSB/EiJ (WSB)",
156            "taxa": "Mus musculus"
157        },
158        {
159            "@id": "/rodent-donors/IGVFDO9199TPBC/",
160            "accession": "IGVFDO9199TPBC",
161            "aliases": [
162                "ali-mortazavi:071_NODJ_10M"
163            ],
164            "sex": "male",
165            "status": "released",
166            "strain_background": "NOD/ShiLtJ (NOD)",
167            "taxa": "Mus musculus"
168        },
169        {
170            "@id": "/rodent-donors/IGVFDO1452VDIT/",
171            "accession": "IGVFDO1452VDIT",
172            "aliases": [
173                "ali-mortazavi:035_AJ_10M"
174            ],
175            "sex": "male",
176            "status": "released",
177            "strain_background": "A/J (AJ)",
178            "taxa": "Mus musculus"
179        },
180        {
181            "@id": "/rodent-donors/IGVFDO8152XDDC/",
182            "accession": "IGVFDO8152XDDC",
183            "aliases": [
184                "ali-mortazavi:090_CASTJ_10F"
185            ],
186            "sex": "female",
187            "status": "released",
188            "strain_background": "CAST/EiJ (CAST)",
189            "taxa": "Mus musculus"
190        },
191        {
192            "@id": "/rodent-donors/IGVFDO1477BPVO/",
193            "accession": "IGVFDO1477BPVO",
194            "aliases": [
195                "ali-mortazavi:088_CASTJ_10F"
196            ],
197            "sex": "female",
198            "status": "released",
199            "strain_background": "CAST/EiJ (CAST)",
200            "taxa": "Mus musculus"
201        },
202        {
203            "@id": "/rodent-donors/IGVFDO5539RLXJ/",
204            "accession": "IGVFDO5539RLXJ",
205            "aliases": [
206                "ali-mortazavi:029_AJ_10M"
207            ],
208            "sex": "male",
209            "status": "released",
210            "strain_background": "A/J (AJ)",
211            "taxa": "Mus musculus"
212        },
213        {
214            "@id": "/rodent-donors/IGVFDO4725SNCJ/",
215            "accession": "IGVFDO4725SNCJ",
216            "aliases": [
217                "ali-mortazavi:017_B6J_10M"
218            ],
219            "sex": "male",
220            "status": "released",
221            "strain_background": "C57BL/6J (B6)",
222            "taxa": "Mus musculus"
223        },
224        {
225            "@id": "/rodent-donors/IGVFDO5872DFML/",
226            "accession": "IGVFDO5872DFML",
227            "aliases": [
228                "ali-mortazavi:094_CASTJ_10F"
229            ],
230            "sex": "female",
231            "status": "released",
232            "strain_background": "CAST/EiJ (CAST)",
233            "taxa": "Mus musculus"
234        },
235        {
236            "@id": "/rodent-donors/IGVFDO6124WGNO/",
237            "accession": "IGVFDO6124WGNO",
238            "aliases": [
239                "ali-mortazavi:042_129S1J_10F"
240            ],
241            "sex": "female",
242            "status": "released",
243            "strain_background": "129S1/SvImJ (129)",
244            "taxa": "Mus musculus"
245        },
246        {
247            "@id": "/rodent-donors/IGVFDO9340WGNV/",
248            "accession": "IGVFDO9340WGNV",
249            "aliases": [
250                "ali-mortazavi:037_129S1J_10M"
251            ],
252            "sex": "male",
253            "status": "released",
254            "strain_background": "129S1/SvImJ (129)",
255            "taxa": "Mus musculus"
256        },
257        {
258            "@id": "/rodent-donors/IGVFDO6066JIEJ/",
259            "accession": "IGVFDO6066JIEJ",
260            "aliases": [
261                "ali-mortazavi:043_129S1J_10M"
262            ],
263            "sex": "male",
264            "status": "released",
265            "strain_background": "129S1/SvImJ (129)",
266            "taxa": "Mus musculus"
267        },
268        {
269            "@id": "/rodent-donors/IGVFDO0696DMIA/",
270            "accession": "IGVFDO0696DMIA",
271            "aliases": [
272                "ali-mortazavi:057_WSBJ_10M"
273            ],
274            "sex": "male",
275            "status": "released",
276            "strain_background": "WSB/EiJ (WSB)",
277            "taxa": "Mus musculus"
278        },
279        {
280            "@id": "/rodent-donors/IGVFDO1744FDIX/",
281            "accession": "IGVFDO1744FDIX",
282            "aliases": [
283                "ali-mortazavi:036_129S1J_10F"
284            ],
285            "sex": "female",
286            "status": "released",
287            "strain_background": "129S1/SvImJ (129)",
288            "taxa": "Mus musculus"
289        },
290        {
291            "@id": "/rodent-donors/IGVFDO3534MDFF/",
292            "accession": "IGVFDO3534MDFF",
293            "aliases": [
294                "ali-mortazavi:046_NZOJ_10F"
295            ],
296            "sex": "female",
297            "status": "released",
298            "strain_background": "NZO/H1LtJ (NZO)",
299            "taxa": "Mus musculus"
300        },
301        {
302            "@id": "/rodent-donors/IGVFDO0681EHNP/",
303            "accession": "IGVFDO0681EHNP",
304            "aliases": [
305                "ali-mortazavi:052_NZOJ_10F"
306            ],
307            "sex": "female",
308            "status": "released",
309            "strain_background": "NZO/H1LtJ (NZO)",
310            "taxa": "Mus musculus"
311        },
312        {
313            "@id": "/rodent-donors/IGVFDO6219LVKW/",
314            "accession": "IGVFDO6219LVKW",
315            "aliases": [
316                "ali-mortazavi:032_AJ_10F"
317            ],
318            "sex": "female",
319            "status": "released",
320            "strain_background": "A/J (AJ)",
321            "taxa": "Mus musculus"
322        },
323        {
324            "@id": "/rodent-donors/IGVFDO3436ZMLY/",
325            "accession": "IGVFDO3436ZMLY",
326            "aliases": [
327                "ali-mortazavi:091_CASTJ_10M"
328            ],
329            "sex": "male",
330            "status": "released",
331            "strain_background": "CAST/EiJ (CAST)",
332            "taxa": "Mus musculus"
333        },
334        {
335            "@id": "/rodent-donors/IGVFDO0430HQIU/",
336            "accession": "IGVFDO0430HQIU",
337            "aliases": [
338                "ali-mortazavi:041_129S1J_10M"
339            ],
340            "sex": "male",
341            "status": "released",
342            "strain_background": "129S1/SvImJ (129)",
343            "taxa": "Mus musculus"
344        },
345        {
346            "@id": "/rodent-donors/IGVFDO2831PZHE/",
347            "accession": "IGVFDO2831PZHE",
348            "aliases": [
349                "ali-mortazavi:077_PWKJ_10M"
350            ],
351            "sex": "male",
352            "status": "released",
353            "strain_background": "PWK/PhJ (PWK)",
354            "taxa": "Mus musculus"
355        },
356        {
357            "@id": "/rodent-donors/IGVFDO5177QEWF/",
358            "accession": "IGVFDO5177QEWF",
359            "aliases": [
360                "ali-mortazavi:063_WSBJ_10M"
361            ],
362            "sex": "male",
363            "status": "released",
364            "strain_background": "WSB/EiJ (WSB)",
365            "taxa": "Mus musculus"
366        },
367        {
368            "@id": "/rodent-donors/IGVFDO1643VEDI/",
369            "accession": "IGVFDO1643VEDI",
370            "aliases": [
371                "ali-mortazavi:019_B6J_10M"
372            ],
373            "sex": "male",
374            "status": "released",
375            "strain_background": "C57BL/6J (B6)",
376            "taxa": "Mus musculus"
377        },
378        {
379            "@id": "/rodent-donors/IGVFDO7007WBAX/",
380            "accession": "IGVFDO7007WBAX",
381            "aliases": [
382                "ali-mortazavi:016_B6J_10F"
383            ],
384            "sex": "female",
385            "status": "released",
386            "strain_background": "C57BL/6J (B6)",
387            "taxa": "Mus musculus"
388        },
389        {
390            "@id": "/rodent-donors/IGVFDO0751WQHI/",
391            "accession": "IGVFDO0751WQHI",
392            "aliases": [
393                "ali-mortazavi:080_PWKJ_10F"
394            ],
395            "sex": "female",
396            "status": "released",
397            "strain_background": "PWK/PhJ (PWK)",
398            "taxa": "Mus musculus"
399        },
400        {
401            "@id": "/rodent-donors/IGVFDO2301HIUQ/",
402            "accession": "IGVFDO2301HIUQ",
403            "aliases": [
404                "ali-mortazavi:067_NODJ_10M"
405            ],
406            "sex": "male",
407            "status": "released",
408            "strain_background": "NOD/ShiLtJ (NOD)",
409            "taxa": "Mus musculus"
410        },
411        {
412            "@id": "/rodent-donors/IGVFDO3640WUBU/",
413            "accession": "IGVFDO3640WUBU",
414            "aliases": [
415                "ali-mortazavi:066_NODJ_10F"
416            ],
417            "sex": "female",
418            "status": "released",
419            "strain_background": "NOD/ShiLtJ (NOD)",
420            "taxa": "Mus musculus"
421        },
422        {
423            "@id": "/rodent-donors/IGVFDO4707SGWM/",
424            "accession": "IGVFDO4707SGWM",
425            "aliases": [
426                "ali-mortazavi:051_NZOJ_10M"
427            ],
428            "sex": "male",
429            "status": "released",
430            "strain_background": "NZO/H1LtJ (NZO)",
431            "taxa": "Mus musculus"
432        },
433        {
434            "@id": "/rodent-donors/IGVFDO9510ILZG/",
435            "accession": "IGVFDO9510ILZG",
436            "aliases": [
437                "ali-mortazavi:053_NZOJ_10M"
438            ],
439            "sex": "male",
440            "status": "released",
441            "strain_background": "NZO/H1LtJ (NZO)",
442            "taxa": "Mus musculus"
443        },
444        {
445            "@id": "/rodent-donors/IGVFDO6112GRYR/",
446            "accession": "IGVFDO6112GRYR",
447            "aliases": [
448                "ali-mortazavi:059_WSBJ_10M"
449            ],
450            "sex": "male",
451            "status": "released",
452            "strain_background": "WSB/EiJ (WSB)",
453            "taxa": "Mus musculus"
454        },
455        {
456            "@id": "/rodent-donors/IGVFDO3662UKFW/",
457            "accession": "IGVFDO3662UKFW",
458            "aliases": [
459                "ali-mortazavi:087_CASTJ_10M"
460            ],
461            "sex": "male",
462            "status": "released",
463            "strain_background": "CAST/EiJ (CAST)",
464            "taxa": "Mus musculus"
465        },
466        {
467            "@id": "/rodent-donors/IGVFDO9890MXGN/",
468            "accession": "IGVFDO9890MXGN",
469            "aliases": [
470                "ali-mortazavi:068_NODJ_10F"
471            ],
472            "sex": "female",
473            "status": "released",
474            "strain_background": "NOD/ShiLtJ (NOD)",
475            "taxa": "Mus musculus"
476        },
477        {
478            "@id": "/rodent-donors/IGVFDO4788BIQB/",
479            "accession": "IGVFDO4788BIQB",
480            "aliases": [
481                "ali-mortazavi:020_B6J_10F"
482            ],
483            "sex": "female",
484            "status": "released",
485            "strain_background": "C57BL/6J (B6)",
486            "taxa": "Mus musculus"
487        },
488        {
489            "@id": "/rodent-donors/IGVFDO9202WGJZ/",
490            "accession": "IGVFDO9202WGJZ",
491            "aliases": [
492                "ali-mortazavi:085_PWKJ_10M"
493            ],
494            "sex": "male",
495            "status": "released",
496            "strain_background": "PWK/PhJ (PWK)",
497            "taxa": "Mus musculus"
498        },
499        {
500            "@id": "/rodent-donors/IGVFDO7062NBTQ/",
501            "accession": "IGVFDO7062NBTQ",
502            "aliases": [
503                "ali-mortazavi:079_PWKJ_10M"
504            ],
505            "sex": "male",
506            "status": "released",
507            "strain_background": "PWK/PhJ (PWK)",
508            "taxa": "Mus musculus"
509        },
510        {
511            "@id": "/rodent-donors/IGVFDO5085MJSP/",
512            "accession": "IGVFDO5085MJSP",
513            "aliases": [
514                "ali-mortazavi:048_NZOJ_10F"
515            ],
516            "sex": "female",
517            "status": "released",
518            "strain_background": "NZO/H1LtJ (NZO)",
519            "taxa": "Mus musculus"
520        },
521        {
522            "@id": "/rodent-donors/IGVFDO5523UFUN/",
523            "accession": "IGVFDO5523UFUN",
524            "aliases": [
525                "ali-mortazavi:070_NODJ_10F"
526            ],
527            "sex": "female",
528            "status": "released",
529            "strain_background": "NOD/ShiLtJ (NOD)",
530            "taxa": "Mus musculus"
531        },
532        {
533            "@id": "/rodent-donors/IGVFDO2292YGGE/",
534            "accession": "IGVFDO2292YGGE",
535            "aliases": [
536                "ali-mortazavi:049_NZOJ_10M"
537            ],
538            "sex": "male",
539            "status": "released",
540            "strain_background": "NZO/H1LtJ (NZO)",
541            "taxa": "Mus musculus"
542        },
543        {
544            "@id": "/rodent-donors/IGVFDO5737FRWD/",
545            "accession": "IGVFDO5737FRWD",
546            "aliases": [
547                "ali-mortazavi:081_PWKJ_10M"
548            ],
549            "sex": "male",
550            "status": "released",
551            "strain_background": "PWK/PhJ (PWK)",
552            "taxa": "Mus musculus"
553        },
554        {
555            "@id": "/rodent-donors/IGVFDO8276XXVT/",
556            "accession": "IGVFDO8276XXVT",
557            "aliases": [
558                "ali-mortazavi:074_NODJ_10F"
559            ],
560            "sex": "female",
561            "status": "released",
562            "strain_background": "NOD/ShiLtJ (NOD)",
563            "taxa": "Mus musculus"
564        },
565        {
566            "@id": "/rodent-donors/IGVFDO4469VYEZ/",
567            "accession": "IGVFDO4469VYEZ",
568            "aliases": [
569                "ali-mortazavi:073_NODJ_10M"
570            ],
571            "sex": "male",
572            "status": "released",
573            "strain_background": "NOD/ShiLtJ (NOD)",
574            "taxa": "Mus musculus"
575        },
576        {
577            "@id": "/rodent-donors/IGVFDO3207TERA/",
578            "accession": "IGVFDO3207TERA",
579            "aliases": [
580                "ali-mortazavi:086_CASTJ_10F"
581            ],
582            "sex": "female",
583            "status": "released",
584            "strain_background": "CAST/EiJ (CAST)",
585            "taxa": "Mus musculus"
586        },
587        {
588            "@id": "/rodent-donors/IGVFDO3762EAWT/",
589            "accession": "IGVFDO3762EAWT",
590            "aliases": [
591                "ali-mortazavi:076_PWKJ_10F"
592            ],
593            "sex": "female",
594            "status": "released",
595            "strain_background": "PWK/PhJ (PWK)",
596            "taxa": "Mus musculus"
597        },
598        {
599            "@id": "/rodent-donors/IGVFDO7255VZBN/",
600            "accession": "IGVFDO7255VZBN",
601            "aliases": [
602                "ali-mortazavi:062_WSBJ_10F"
603            ],
604            "sex": "female",
605            "status": "released",
606            "strain_background": "WSB/EiJ (WSB)",
607            "taxa": "Mus musculus"
608        },
609        {
610            "@id": "/rodent-donors/IGVFDO9374WXKK/",
611            "accession": "IGVFDO9374WXKK",
612            "aliases": [
613                "ali-mortazavi:028_AJ_10F"
614            ],
615            "sex": "female",
616            "status": "released",
617            "strain_background": "A/J (AJ)",
618            "taxa": "Mus musculus"
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1279    ],
1280    "input_for": [
1281        "/analysis-sets/IGVFDS7041WWCC/"
1282    ],
1283    "lab": {
1284        "@id": "/labs/ali-mortazavi/",
1285        "title": "Ali Mortazavi, UCI"
1286    },
1287    "notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
1288    "onlist_files": [
1289        "/tabular-files/IGVFFI2591OFQO/",
1290        "/tabular-files/IGVFFI1138MCVX/"
1291    ],
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1293    "preferred_assay_title": "Parse SPLiT-seq",
1294    "protocols": [
1295        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-n2bvj3noplk5/v2",
1296        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-14egn334ml5d/v2",
1297        "https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
1298        "https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
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1324                    "@type": [
1325                        "SampleTerm",
1326                        "OntologyTerm",
1327                        "Item"
1328                    ],
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1335                    "@type": [
1336                        "SampleTerm",
1337                        "OntologyTerm",
1338                        "Item"
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1347            "taxa": "Mus musculus",
1348            "treatments": []
1349        }
1350    ],
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1359        "title": "Diane Trout"
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1362    "summary": "Parse SPLiT-seq",
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1364}