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INDEXED
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MeasurementSet
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IGVFDS6355YALJ
IGVFDS6355YALJ
released
Json view
File Set Type
experimental data
Summary
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Assay Term
massively parallel reporter assay
Sample Summaries
mouse embryonic stem differentiated cell specimen induced to embryoid body for 4 days, male, Mus musculus WD44 transfected with a reporter library
Construct Library Sets
IGVFDS7655GRFI
Reporter library targeting accessible genome regions in many genomic loci
Protocols
https://www.protocols.io/file/n92rb7r27.pdf
Aliases
jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day4_reads
Publications
Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters
Sequencing Results (Illumina)
3 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI4523HTCR
fastq
reads
R2
1
Illumina NextSeq 500
HNGFGBGXL
1
132 MB
Jay Shendure, UW
validated
IGVFFI4777WSIL
fastq
reads
R1
1
Illumina NextSeq 500
HNGFGBGXL
1
266 MB
Jay Shendure, UW
validated
IGVFFI6724RUYY
fastq
reads
R3
1
Illumina NextSeq 500
HNGFGBGXL
1
384 MB
Jay Shendure, UW
validated
Samples
Donors
File Sets Using This Measurement Set as an Input
Auxiliary Datasets
Attribution
Award
HG011966
Principal Investigator(s)
Jay Shendure
,
Nadav Ahituv
,
Martin Kircher
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW